# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	3.81e-24	d.231.1.1	86817
3i1cA	324	1.772		
1al3	324	2.693		
3frxA	319	2.765		
1otjA	283	2.895	b.82.2.5	93517
1pc6A	146	3.395	d.262.1.1	94430
1ne7A	289	4.135	c.124.1.1	91833
1nx8A	273	4.503	b.82.2.8	86374
1jsxA	207	4.546	c.66.1.20	71846
2wnwA	447	5.680		
1al3A	324	7.113	c.94.1.1	35835
1h54A	754	8.454	a.102.1.4,b.30.5.3	60634,60635
1w2xA	758	9.653	c.14.1.4,c.14.1.4	109134,109135
3hrpA	409	11.79		
3g23A	274	12.24		
3bwsA	433	13.48		
1uyrA	737	14.40	c.14.1.4,c.14.1.4	100188,100189
1xcrA	316	16.36	d.290.1.2	121860
3etrB	305	17.56		
1brwA	433	18.48	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
2f2sA	406	18.84		
2d4yA	463	19.82		
1hkxA	147	20.04	d.17.4.7	83567
2bpqA	373	22.38		
3ejaA	208	22.78		
2v3fA	505	23.06	b.71.1.2,c.1.8.3	152453,152454
2z2nA	299	23.82		
3bx4B	146	24.11		
3g02A	408	25.53		
3llpA	493	25.56		
3g2mA	299	25.76		
1kfuL	699	27.58	a.39.1.8,b.14.1.1,d.3.1.3	68571,68572,68573
3li3A	314	29.74		
2hxrA	238	31.28		
2igbA	179	31.58	c.61.1.1	147655
1ewfA	456	32.10	d.83.1.1,d.83.1.1	40024,40025
1h30A	422	32.98	b.29.1.4,b.29.1.4	76604,76605
2p1mB	594	33.33		
1ozhA	566	33.85	c.31.1.3,c.36.1.5,c.36.1.9	93833,93834,93835
3caiA	406	34.08		
3h5qA	436	34.93		
2wvgA	568	36.31		
3fesA	145	36.90		
3dr2A	305	37.07		
1i6aA	219	39.07	c.94.1.1	61827
3dxoA	121	40.46	d.17.4.19	157933
1q7fA	286	40.88	b.68.9.1	96036
1gskA	513	42.75	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
3do6A	543	44.00		
1y7mA	164	44.88	b.160.1.1,d.7.1.1	122696,122697
3frkA	373	45.93		
1svb	395	46.81		
1uyjA	296	47.30	f.8.1.2	108143
2wbpA	358	47.64		
1rwiA	270	52.54	b.68.9.1	97987
3eypA	469	52.67		
1ixh	321	52.71		
2ghsA	326	53.04	b.68.6.1	135209
2hu5A	582	54.89	b.69.7.2,c.69.1.33	136763,136764
1o7qA	289	55.64	c.68.1.9	92626
3hxjA	330	55.77		
1dykA	394	56.03	b.29.1.4,b.29.1.4	24223,24224
3fw6A	534	56.38		
2fkkA	206	56.39		
2qfnA	138	56.98		
2wg4B	457	58.30		
3ms5A	388	60.06		
3h0bA	405	61.46		
1w50A	411	62.86	b.50.1.2	109173
2e55A	208	63.01		
1v04A	355	63.10	b.68.6.2	100240
1hl9A	449	63.58	b.71.1.3,c.1.8.11	90650,90651
3kyhC	461	64.24		
1p22A	435	64.45	a.158.1.1,b.69.4.1	87715,87716
1z8sA	146	64.87		
2ppeA	343	64.93	b.6.1.3,b.6.1.3	149769,149770
3e7fA	265	66.07		
2bjqA	345	66.62	b.169.1.1,b.169.1.1	128626,128627
3f7mA	279	67.38		
1nexB	464	68.66	a.158.1.1,b.69.4.1	80443,80444
2gaxA	135	70.30	c.131.1.1	147100
1lst	239	71.01		
3fimB	566	71.56		
3hfqA	347	73.21		
1jtdB	273	73.69	b.69.5.2	67265
1chmA	401	73.71	c.55.2.1,d.127.1.1	33545,41142
1n62C	288	74.41	d.87.2.1,d.145.1.3	80094,80095
3k8xA	758	74.61		
2vsmA	416	75.49		
2yskA	145	76.38		
3a4cA	106	76.63		
3h3hA	122	77.03		
2qtcA	886	77.57	c.36.1.6,c.36.1.10,c.48.1.1	151343,151344,151345
2wgoA	98	77.90		
1itvA	195	78.71	b.66.1.1	76791
1tzfA	259	78.72	c.68.1.13	107476
1qo7A	394	79.71	c.69.1.11	34697
1zl0A	311	81.43	c.8.10.1,c.23.16.7	125231,125232
2v44A	189	81.50		
3hhgA	306	81.86		
2c71A	216	82.45	c.6.2.3	130017
2ez9A	603	84.37	c.31.1.3,c.36.1.5,c.36.1.9	132627,132628,132629
3immA	201	84.63		
1w2lA	99	86.73		
1mt6A	280	87.62	b.76.2.1,b.85.7.1	79446,79447
2olpA	152	87.62		
3eb9A	266	88.27		
2j0fA	482	88.95		
2pywA	420	89.00