# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 1.01e-15 d.231.1.1 86817 3fimB 566 0.1799 2wnwA 447 0.997 1otjA 283 2.223 b.82.2.5 93517 1kdgA 546 3.983 c.3.1.2,d.16.1.1 77337,77338 3i1cA 324 4.092 2v3fA 505 4.434 b.71.1.2,c.1.8.3 152453,152454 1kbjA 412 4.859 c.1.4.1 72280 1cf3A 583 7.005 c.3.1.2,d.16.1.1 30385,37949 1w50A 411 11.61 b.50.1.2 109173 1nx8A 273 13.27 b.82.2.8 86374 1np7A 489 13.69 a.99.1.1,c.28.1.1 80677,80678 2ez9A 603 13.97 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 2zq0A 738 15.00 1b7yB 785 16.65 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 3l5eA 414 17.39 3hsiA 458 17.47 1wb9A 800 19.16 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 2ckfA 454 20.82 2nliA 368 21.77 1wx1A 335 21.95 1z8sA 146 22.11 2jbvA 546 23.95 3h0bA 405 24.10 1tb3A 352 25.38 c.1.4.1 119205 2iqgA 406 27.00 b.50.1.2 137588 3ejaA 208 27.13 3bneA 839 28.65 a.119.1.1,b.12.1.1 155436,155437 2eceA 462 29.79 3k4kA 623 30.42 2pywA 420 30.79 2rduA 387 31.40 2x1dA 357 32.99 3hwoA 394 34.14 3g02A 408 35.28 1vixA 420 36.04 c.56.5.4,d.58.19.1 100777,100778 3blyA 623 36.56 2vx5A 396 36.95 2z2nA 299 37.29 3hrpA 409 37.52 2vobA 652 37.87 1nthA 458 39.30 c.1.25.1 80730 1tt0A 623 39.38 2wjoA 412 43.63 2qtcA 886 43.73 c.36.1.6,c.36.1.10,c.48.1.1 151343,151344,151345 3cox 507 43.96 2jkcA 538 45.48 2gefA 217 47.31 3a4cA 106 49.09 2wvgA 568 50.32 1goxA 369 50.78 c.1.4.1 28607 1hrnA 337 51.40 b.50.1.2 26869 2q09A 416 51.87 b.92.1.10,c.1.9.17 149984,149985 2aprA 325 52.59 b.50.1.2 26819 2f2sA 406 52.60 1h30A 422 52.85 b.29.1.4,b.29.1.4 76604,76605 2b8lA 405 53.02 1pa1A 310 53.78 c.45.1.2 94404 1qo7A 394 54.96 c.69.1.11 34697 3e7fA 265 54.96 1w18A 493 55.58 2fhfA 1083 55.65 b.1.18.2,b.1.18.2,b.3.1.3,b.71.1.1,c.1.8.1 147035,147036,147037,147038,147039 2pgnA 589 57.87 2ci1A 275 58.65 1wchA 315 58.68 c.45.1.2 114508 1peqA 714 59.37 a.98.1.1,c.7.1.2 104131,104132 3eb9A 266 59.48 2nzlA 392 59.65 3kyhC 461 60.17 3g7dA 443 60.45 1rwiA 270 61.71 b.68.9.1 97987 1xpkC 388 61.73 c.95.1.2,c.95.1.2 115747,115748 2i1yA 301 61.82 1ucdA 190 62.72 d.124.1.1 107767 2gbwA 454 62.88 1fknA 391 64.31 b.50.1.2 26879 3bwsA 433 65.06 2du2A 374 66.83 1oihA 301 67.30 b.82.2.5 93051 3df7A 305 67.75 2jerA 389 70.49 d.126.1.6 148019 2j8sA 1055 72.20 3llpA 493 73.00 1ji1A 637 73.13 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1i0lA 221 75.35 c.61.1.1 71096 1z7aA 308 75.64 c.6.2.6 124591 3ms5A 388 76.18 2vijA 392 77.18 1ozhA 566 77.40 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2nv0A 196 80.06 c.23.16.1 138625 1l5oA 356 80.86 c.39.1.1 77711 2ieaA 886 81.28 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1al3 324 82.53 2ifcA 385 86.29 3etrB 305 86.49 1m1cA 680 87.44 e.42.1.1 78395 3fw6A 534 87.70 1l8aA 886 89.42 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1pc6A 146 89.95 d.262.1.1 94430