# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	1.21e-23	d.231.1.1	86817
1h6wA	312	5.47e-08	d.231.1.1,b.108.1.1	83059,83060
1brwA	433	3.414	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1otjA	283	4.263	b.82.2.5	93517
1al3	324	7.930		
2qcuA	501	9.155		
3bx4A	136	10.07		
1khdA	345	10.26	a.46.2.1,c.27.1.1	77400,77401
2j07A	420	10.26	a.99.1.1,c.28.1.1	137891,137892
2douA	376	11.55		
8fabB	224	11.84	b.1.1.1,b.1.1.2	19773,20883
2fkkA	206	13.63		
2eveA	157	13.99	b.122.1.8	132427
2bpqA	373	16.04		
1ne7A	289	17.70	c.124.1.1	91833
1nx8A	273	22.69	b.82.2.8	86374
1uouA	474	23.15	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1fiuA	286	24.13	c.52.1.10	33317
1z8sA	146	24.36		
3iohA	298	25.78		
1xg8A	111	29.88	c.47.1.17	115283
2otuB	118	31.37		
2vxsH	225	31.56		
3fbxA	559	33.20		
2gaxA	135	34.37	c.131.1.1	147100
3g23A	274	36.18		
1mdaH	368	36.40	b.69.2.1	27637
1zglP	249	38.89	b.1.1.1,b.1.1.2	125047,125048
1pc6A	146	39.12	d.262.1.1	94430
3dsdA	349	39.71		
2vxvH	223	40.05		
1kgcE	242	41.36	b.1.1.1,b.1.1.2	77386,77387
2jd4A	383	41.61		
2tpt	440	42.15		
2ieaA	886	42.47	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2x8aA	274	42.53		
2gpyA	233	43.64		
1nexB	464	44.26	a.158.1.1,b.69.4.1	80443,80444
1hilB	220	45.30	b.1.1.1,b.1.1.2	19787,20897
2we0A	286	46.43		
1vnsA	609	47.84	a.111.1.3	19061
1h7zA	194	48.25	b.21.1.1	60733
1a7iA	81	50.54	g.39.1.3,g.39.1.3	45143,45144
3f7mA	279	51.30		
1q7hA	153	51.63	b.122.1.1,d.17.6.2	96042,96043
1fnsA	196	53.12	c.62.1.1	34136
1tuwA	109	53.40	d.58.4.8	107346
3kymB	227	54.89		
3hr5B	226	55.32		
3c5vA	316	55.48		
2hwzH	227	55.74		
2gsoA	393	55.93		
2pw0A	397	58.32		
2pwaA	279	62.38	c.41.1.1	139762
1esl	162	62.98		
1a76	326	65.94		
1ogaE	252	66.58	b.1.1.1,b.1.1.2	86992,86993
3he7D	242	66.63		
3hntH	220	66.90		
1vqqA	646	67.58	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
3iu7A	288	67.83		
1nnwA	252	68.33	d.159.1.5	80674
2gxaA	274	68.55		
1ttzA	87	69.49	c.47.1.1	107309
2bvcA	486	70.32	d.15.9.1,d.128.1.1	129243,129244
1htqA	477	70.94	d.15.9.1,d.128.1.1	71035,71036
3fesA	145	71.14		
3gnmH	223	71.15		
1pjaA	302	71.87	c.69.1.13	94758
2wd6A	349	72.16		
2wgoA	98	73.48		
2p49B	123	73.94	b.1.1.1	149207
1lst	239	74.25		
3hv1A	268	74.30		
3fijA	254	74.55		
2h9fA	396	75.88	d.21.1.4,d.21.1.4	147248,147249
2axjA	242	76.53		
3tmkA	216	77.37	c.37.1.1	31920
1q9rB	222	77.50	b.1.1.1,b.1.1.2	96307,96308
1yjdC	140	79.12	b.1.1.1	144649
3e8uH	217	80.14		
3f3qA	109	80.86		
2vimA	104	81.13		
2ijzA	428	81.98		
2vhaA	287	84.94		
1qisA	396	85.40	c.67.1.1	34284
1ew6A	137	85.79	a.1.1.2	15637
1ob8A	135	86.24	c.52.1.18	111627
3hcnA	359	86.82		
2yskA	145	87.02		
2ipuG	226	87.67		
1up8A	598	88.26	a.111.1.2	99710
1yo1A	260	88.28		
1zanH	224	88.51		
2r6zA	258	88.75		
2kiiA	181	89.20		
2v44A	189	89.71