# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	3.73e-25	d.231.1.1	86817
1h6wA	312	3.63e-08	d.231.1.1,b.108.1.1	83059,83060
1otjA	283	2.035	b.82.2.5	93517
1brwA	433	6.004	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1al3	324	7.769		
2douA	376	10.79		
8fabB	224	12.76	b.1.1.1,b.1.1.2	19773,20883
3bx4A	136	13.66		
2gpyA	233	14.10		
1ne7A	289	14.84	c.124.1.1	91833
2bpqA	373	15.37		
3iohA	298	15.43		
1nexB	464	15.73	a.158.1.1,b.69.4.1	80443,80444
2j07A	420	18.57	a.99.1.1,c.28.1.1	137891,137892
1khdA	345	18.61	a.46.2.1,c.27.1.1	77400,77401
1mdaH	368	20.05	b.69.2.1	27637
2fkkA	206	20.65		
3dsdA	349	20.89		
1nx8A	273	21.43	b.82.2.8	86374
3f7mA	279	28.38		
2qcuA	501	28.87		
2otuB	118	29.22		
2vxsH	225	29.99		
1fiuA	286	30.22	c.52.1.10	33317
2wd6A	349	31.73		
1z8sA	146	33.59		
1nnwA	252	33.90	d.159.1.5	80674
2vxvH	223	34.71		
2we0A	286	38.74		
1tuwA	109	41.22	d.58.4.8	107346
2vuhB	139	41.38		
3c5vA	316	43.16		
3d5pA	144	44.51		
1ew6A	137	44.84	a.1.1.2	15637
1t1uA	639	45.01	c.43.1.3,c.43.1.3	119110,119111
1tib	269	45.39		
1dw0A	112	45.84	a.3.1.1	15911
2jd4A	383	46.24		
1pc6A	146	46.93	d.262.1.1	94430
2jk1A	139	47.14		
1vnsA	609	47.46	a.111.1.3	19061
3g23A	274	48.44		
2gsoA	393	49.79		
1zglP	249	50.84	b.1.1.1,b.1.1.2	125047,125048
1xg8A	111	52.70	c.47.1.17	115283
1yo1A	260	52.84		
1s4uX	407	54.72	b.69.4.1	112027
2qfnA	138	55.36		
1jy1A	464	56.93	d.136.1.3,d.136.1.3	67438,67439
1rkbA	173	58.17	c.37.1.1	111854
2eveA	157	59.42	b.122.1.8	132427
2qs9A	194	61.26		
3hcnA	359	62.37		
2vy0A	264	63.29		
2i8lA	156	64.35		
2olpA	152	64.68		
3fijA	254	65.04		
2r6zA	258	65.54		
1n67A	359	65.62	b.2.3.4,b.2.3.4	85354,85355
1up8A	598	65.71	a.111.1.2	99710
3h3hA	122	66.02		
3brdA	477	66.32	b.1.18.1,b.2.5.8,b.42.7.1	155505,155506,155507
2pwaA	279	67.82	c.41.1.1	139762
1vqqA	646	67.91	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2bkxA	242	68.65		
1lst	239	69.07		
2etvA	346	69.63	c.92.2.4	132372
1uouA	474	69.75	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
3li3A	314	69.81		
3fbxA	559	69.99		
1ttzA	87	70.25	c.47.1.1	107309
3bdwB	120	70.27		
2wgoA	98	70.71		
3he7D	242	71.26		
3etrB	305	71.57		
1fnsA	196	72.49	c.62.1.1	34136
1ahxA	396	72.95	c.67.1.1	34293
2vimA	104	73.06		
1kgcE	242	73.19	b.1.1.1,b.1.1.2	77386,77387
3fesA	145	73.44		
2kiiA	181	73.95		
1pjxA	314	74.93	b.68.6.1	104167
1ut8A	291	76.27	a.60.7.1,c.120.1.2	99908,99909
2qq9A	226	76.42		
3iu7A	288	76.80		
1xo1A	291	78.87	a.60.7.1,c.120.1.2	18086,33356
1p1jA	533	79.43	c.2.1.3,d.81.1.3	87687,87688
1pjaA	302	79.91	c.69.1.13	94758
1a7iA	81	80.56	g.39.1.3,g.39.1.3	45143,45144
1hilB	220	80.79	b.1.1.1,b.1.1.2	19787,20897
1wxrA	1048	81.07		
3cssA	267	82.15		
1ep8A	112	82.43	c.47.1.1	64907
1a76	326	82.71		
2gxaA	274	83.39		
1ogaE	252	83.55	b.1.1.1,b.1.1.2	86992,86993
2gdmA	153	83.70	a.1.1.2	15212
1ve5A	311	84.42	c.79.1.1	120013
1vaxA	287	84.64	d.96.1.4,d.96.1.4	119910,119911
2oypA	109	84.93		
1h7zA	194	84.93	b.21.1.1	60733
1mzuA	129	86.99	d.110.3.1	79714
2tpt	440	87.16		
1vb3A	428	87.87	c.79.1.1	119942
3f3qA	109	88.09		
3h3lA	241	88.53		
2yvtA	260	89.09	d.159.1.6	153779
3e8uH	217	89.66		
2gaxA	135	89.83	c.131.1.1	147100