# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 6.71e-25 d.231.1.1 86817 1h6wA 312 3.80e-08 d.231.1.1,b.108.1.1 83059,83060 1otjA 283 1.941 b.82.2.5 93517 1brwA 433 7.506 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1nexB 464 8.784 a.158.1.1,b.69.4.1 80443,80444 2douA 376 10.02 1al3 324 10.05 3bx4A 136 10.39 2j07A 420 12.34 a.99.1.1,c.28.1.1 137891,137892 3iohA 298 14.50 8fabB 224 15.87 b.1.1.1,b.1.1.2 19773,20883 1mdaH 368 17.03 b.69.2.1 27637 2bpqA 373 17.11 2fkkA 206 17.14 1nx8A 273 17.42 b.82.2.8 86374 3dsdA 349 18.30 2gpyA 233 22.11 2qcuA 501 23.34 1ne7A 289 24.63 c.124.1.1 91833 1khdA 345 24.81 a.46.2.1,c.27.1.1 77400,77401 3f7mA 279 25.27 1yo1A 260 26.12 2we0A 286 26.60 2jd4A 383 30.28 1fiuA 286 30.46 c.52.1.10 33317 2otuB 118 35.32 2vxsH 225 36.28 3d5pA 144 37.51 2wd6A 349 38.57 1t1uA 639 39.77 c.43.1.3,c.43.1.3 119110,119111 1tib 269 40.45 1z8sA 146 40.75 3c5vA 316 41.50 1nnwA 252 42.85 d.159.1.5 80674 1pc6A 146 45.08 d.262.1.1 94430 1zglP 249 45.25 b.1.1.1,b.1.1.2 125047,125048 3hcnA 359 47.47 1rkbA 173 49.35 c.37.1.1 111854 1tuwA 109 50.86 d.58.4.8 107346 3h3lA 241 51.28 2vxvH 223 51.59 1qy5A 269 53.44 d.122.1.1 96573 1fnsA 196 54.16 c.62.1.1 34136 1s4uX 407 54.41 b.69.4.1 112027 3g23A 274 56.26 2gsoA 393 57.63 2kiiA 181 57.74 3fv7A 244 59.03 2vuhB 139 60.47 1ob8A 135 60.59 c.52.1.18 111627 2pwaA 279 60.96 c.41.1.1 139762 1xg8A 111 61.27 c.47.1.17 115283 1uouA 474 62.27 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1dw0A 112 62.54 a.3.1.1 15911 3g4pA 244 62.56 3etrB 305 62.70 2etvA 346 62.82 c.92.2.4 132372 3bdwB 120 63.18 2r6zA 258 64.00 2jk1A 139 64.21 2vy0A 264 64.40 2eveA 157 65.55 b.122.1.8 132427 2qs9A 194 66.31 1pjxA 314 66.81 b.68.6.1 104167 1ttzA 87 67.10 c.47.1.1 107309 1jy1A 464 67.48 d.136.1.3,d.136.1.3 67438,67439 2pm7B 297 68.37 2i8lA 156 68.65 3iu7A 288 68.88 1n67A 359 68.95 b.2.3.4,b.2.3.4 85354,85355 2breA 219 69.59 d.122.1.1 128994 2vimA 104 71.04 1pjaA 302 73.07 c.69.1.13 94758 1a76 326 73.19 1pkhA 204 73.32 b.85.4.1 94832 3mgaA 407 73.66 1p1jA 533 73.85 c.2.1.3,d.81.1.3 87687,87688 2wgoA 98 74.25 3li3A 314 74.79 2f51A 118 75.26 2ieaA 886 76.84 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 2wz9A 153 78.09 3tmkA 216 78.15 c.37.1.1 31920 1ep8A 112 78.23 c.47.1.1 64907 1vqqA 646 78.49 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2ckkA 127 78.69 2qdlA 165 79.46 3cssA 267 80.27 3brdA 477 81.44 b.1.18.1,b.2.5.8,b.42.7.1 155505,155506,155507 2q83A 346 81.52 1q15A 503 83.02 c.26.2.1,d.153.1.1 95538,95539 3n6xA 474 83.02 3fijA 254 84.01 2bkxA 242 85.34 1vaxA 287 85.87 d.96.1.4,d.96.1.4 119910,119911 1kgcE 242 86.00 b.1.1.1,b.1.1.2 77386,77387 3h3hA 122 86.25 1o7sA 127 86.35 b.1.1.1 86644 2x8aA 274 86.89 3fesA 145 87.11 1xcrA 316 87.32 d.290.1.2 121860 3f3qA 109 87.43 1a7iA 81 87.66 g.39.1.3,g.39.1.3 45143,45144 1ew6A 137 88.50 a.1.1.2 15637 2ijzA 428 88.85 1up8A 598 89.02 a.111.1.2 99710 2wnfA 298 89.77 1lst 239 89.94