# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	4.87e-23	d.231.1.1	86817
1h6wA	312	2.44e-07	d.231.1.1,b.108.1.1	83059,83060
1otjA	283	0.3317	b.82.2.5	93517
2ieaA	886	6.421	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1z8sA	146	7.814		
1nexB	464	10.77	a.158.1.1,b.69.4.1	80443,80444
1nx8A	273	13.10	b.82.2.8	86374
3mgaA	407	13.11		
1lf6A	684	15.15	a.102.1.5,b.30.5.5	77918,77919
3dsdA	349	15.54		
2eveA	157	18.83	b.122.1.8	132427
1t1uA	639	19.75	c.43.1.3,c.43.1.3	119110,119111
1gqiA	708	20.90	c.1.8.10,d.92.2.2	76279,76280
2j07A	420	24.24	a.99.1.1,c.28.1.1	137891,137892
1v3hA	495	25.01	c.1.8.1	108303
2qcuA	501	25.06		
1vnsA	609	25.62	a.111.1.3	19061
1brwA	433	25.70	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
2gsoA	393	26.64		
2j4dA	525	27.44		
1qisA	396	29.63	c.67.1.1	34284
1tib	269	30.63		
1ars	396	33.80		
2jd4A	383	35.08		
3f7mA	279	35.40		
2yskA	145	36.36		
3iohA	298	36.74		
3hcnA	359	37.25		
1zpdA	568	38.08	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
1tezA	474	38.39	a.99.1.1,c.28.1.1	112409,112410
2apjA	260	38.87	c.23.10.7	127128
2gpyA	233	38.98		
2v3fA	505	39.12	b.71.1.2,c.1.8.3	152453,152454
2jk1A	139	40.59		
1vqqA	646	40.89	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2vuhB	139	45.42		
1h30A	422	47.21	b.29.1.4,b.29.1.4	76604,76605
2douA	376	47.53		
1ne7A	289	50.18	c.124.1.1	91833
3fijA	254	50.34		
2we0A	286	50.86		
2vxvH	223	51.41		
2otuB	118	51.92		
1mzuA	129	54.98	d.110.3.1	79714
2hwzH	227	55.13		
8fabB	224	56.28	b.1.1.1,b.1.1.2	19773,20883
2d4wA	504	57.12		
3n6xA	474	57.93		
2f9fA	177	58.19	c.87.1.8	133161
1w7lA	422	58.56	c.67.1.1	109226
2zxdA	455	59.08		
2r5nA	669	60.00	c.36.1.6,c.36.1.10,c.48.1.1	151591,151592,151593
3fbxA	559	61.34		
1l8nA	679	63.61	c.1.8.10,d.92.2.2	84564,84565
1xttA	216	63.67	c.61.1.1	122300
2wd6A	349	65.29		
1khdA	345	65.54	a.46.2.1,c.27.1.1	77400,77401
3a4cA	106	66.22		
2hivA	621	66.32		
2vimA	104	67.20		
2r11A	306	68.67		
1wdpA	495	68.77	c.1.8.1	120907
1nwzA	125	74.94	d.110.3.1	86370
3bzmA	431	78.42	d.161.1.1	155783
3e05A	204	78.95		
1o4sA	389	79.72	c.67.1.1	86620
1wxrA	1048	81.35		
1nnwA	252	82.45	d.159.1.5	80674
1trkA	680	82.56	c.36.1.10,c.36.1.6,c.48.1.1	31803,31804,33090
2x1dA	357	83.58		
3c5vA	316	83.83		
1eg7A	557	84.02	c.37.1.10	32241
3d6iA	112	84.82		
1byb	495	84.88		
2v44A	189	85.64		
1pc6A	146	87.15	d.262.1.1	94430
2o0yA	260	87.97		
2rqqA	113	88.75		
2cx1A	187	88.77	b.122.1.1,d.17.6.4	130967,130968
2r6aC	143	89.79