# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ocyA 198 5.27e-25 d.231.1.1 86817 1h6wA 312 2.93e-08 d.231.1.1,b.108.1.1 83059,83060 2qcuA 501 3.471 3bx4A 136 4.344 1otjA 283 4.636 b.82.2.5 93517 1al3 324 10.07 1brwA 433 10.13 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1ne7A 289 10.18 c.124.1.1 91833 1nexB 464 13.45 a.158.1.1,b.69.4.1 80443,80444 8fabB 224 13.93 b.1.1.1,b.1.1.2 19773,20883 2bpqA 373 14.80 1khdA 345 16.21 a.46.2.1,c.27.1.1 77400,77401 3iohA 298 17.24 1mdaH 368 17.94 b.69.2.1 27637 2gpyA 233 18.67 2j07A 420 20.02 a.99.1.1,c.28.1.1 137891,137892 2ieaA 886 20.24 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1nx8A 273 20.59 b.82.2.8 86374 3dsdA 349 21.64 1s4uX 407 22.98 b.69.4.1 112027 2oitA 434 24.20 2fkkA 206 24.56 3bdwB 120 26.98 1a7iA 81 28.70 g.39.1.3,g.39.1.3 45143,45144 1fnsA 196 29.87 c.62.1.1 34136 2douA 376 31.16 3g23A 274 31.17 1z8sA 146 32.44 2vuhB 139 33.23 3fbxA 559 33.72 2jk1A 139 34.54 1t1uA 639 34.90 c.43.1.3,c.43.1.3 119110,119111 1pc6A 146 35.28 d.262.1.1 94430 1pjxA 314 35.58 b.68.6.1 104167 2x8aA 274 36.39 2jd4A 383 37.08 1fiuA 286 37.14 c.52.1.10 33317 2otuB 118 38.22 1xcrA 316 38.30 d.290.1.2 121860 1yo1A 260 39.43 1uouA 474 40.14 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 3hcnA 359 40.32 2eveA 157 44.22 b.122.1.8 132427 2we0A 286 44.57 3n6xA 474 47.04 2ox9A 140 47.32 2vxvH 223 49.54 1ttzA 87 49.63 c.47.1.1 107309 3ff9A 115 50.19 2yvtA 260 50.47 d.159.1.6 153779 1nnwA 252 51.24 d.159.1.5 80674 3d5pA 144 52.27 1vnsA 609 52.54 a.111.1.3 19061 1q7fA 286 52.89 b.68.9.1 96036 3fesA 145 56.11 2vxsH 225 56.15 1xg8A 111 56.68 c.47.1.17 115283 3iu7A 288 58.18 1n67A 359 59.13 b.2.3.4,b.2.3.4 85354,85355 2vimA 104 59.49 1pguA 615 62.26 b.69.4.1,b.69.4.1 88069,88070 3hxjA 330 62.41 1p22A 435 63.71 a.158.1.1,b.69.4.1 87715,87716 1tib 269 64.12 1vqqA 646 64.26 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 3f3qA 109 65.54 1rxxA 421 65.61 d.126.1.4 98061 2gaxA 135 65.97 c.131.1.1 147100 3he7D 242 66.28 1a76 326 66.74 1pjaA 302 67.10 c.69.1.13 94758 2yskA 145 67.35 2wd6A 349 69.07 2gxaA 274 69.34 1ijbA 202 69.82 c.62.1.1 71229 3c5vA 316 70.14 3etrB 305 70.57 1tuwA 109 70.88 d.58.4.8 107346 2o0yA 260 70.90 2vrqA 496 70.94 1ocvA 125 71.07 d.17.4.3 86810 1q7hA 153 71.82 b.122.1.1,d.17.6.2 96042,96043 1up8A 598 72.23 a.111.1.2 99710 3cssA 267 72.24 3g4pA 244 74.12 3li3A 314 74.16 2wgoA 98 74.29 1ogaE 252 75.69 b.1.1.1,b.1.1.2 86992,86993 3e3eA 105 75.90 2f5uA 447 78.12 3hupA 130 78.30 2f51A 118 79.19 1zglP 249 79.52 b.1.1.1,b.1.1.2 125047,125048 1zxiC 288 80.95 d.87.2.1,d.145.1.3 125776,125777 1h30A 422 81.36 b.29.1.4,b.29.1.4 76604,76605 1u79A 129 81.44 d.26.1.1 107714 1ep8A 112 81.53 c.47.1.1 64907 3gnjA 111 81.59 3hhvA 110 82.11 2gc7A 386 82.31 b.69.2.1 134954 1h7zA 194 82.72 b.21.1.1 60733 2waeA 680 82.94 2tpt 440 85.20 1egtA 17 85.28 j.45.1.1 46321 2vy0A 264 85.56 1qy5A 269 85.68 d.122.1.1 96573 2wz9A 153 88.21 2wadA 680 88.37 2qs9A 194 88.59 1wzlA 585 89.03 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 3h3hA 122 89.34