# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	8.31e-17	d.231.1.1	86817
1h6wA	312	4.59e-05	d.231.1.1,b.108.1.1	83059,83060
1n67A	359	1.699	b.2.3.4,b.2.3.4	85354,85355
1y4wA	518	2.397	b.29.1.19,b.67.2.3	116470,116471
2ieaA	886	2.881	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2j04B	524	3.756		
1xcrA	316	6.828	d.290.1.2	121860
2j07A	420	7.466	a.99.1.1,c.28.1.1	137891,137892
3g4nA	470	7.743		
2o8bB	1022	8.017		
1jmxB	349	9.101	b.69.2.2	66906
1dnpA	471	9.208	a.99.1.1,c.28.1.1	18775,31630
1brwA	433	9.661	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
3hfqA	347	11.97		
1ji1A	637	12.90	b.1.18.2,b.71.1.1,c.1.8.1	71666,71667,71668
3e4aA	1019	15.53		
1khbA	625	16.24	c.91.1.1,c.109.1.1	68606,68607
1vqqA	646	16.51	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2qb7A	397	21.50		
2whmA	385	22.33		
3k1qC	1196	23.13		
1pjaA	302	24.03	c.69.1.13	94758
1wzlA	585	24.17	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
2madH	373	25.02	b.69.2.1	27639
3gsyA	519	25.24		
2wadA	680	25.89		
2x8aA	274	26.29		
2o0yA	260	27.48		
3cwwA	990	28.96		
3ivmA	693	30.34		
2c2xA	281	30.74		
3e4zA	990	31.67		
1zr6A	503	31.75		
2vxvH	223	34.66		
2yr5A	721	36.57		
2bkxA	242	37.21		
2g5fA	450	38.11	d.161.1.1	134654
1w6sA	599	39.69	b.70.1.1	114284
3fehA	386	40.48		
1soxA	466	40.54	b.1.18.6,d.120.1.1,d.176.1.1	21947,41090,42563
1o12A	376	40.79	b.92.1.5,c.1.9.10	80758,80759
1bn8A	420	42.20	b.80.1.1	28022
3fbxA	559	42.48		
2oitA	434	43.53		
3kdpA	998	43.86		
3cm8A	471	45.26		
2vxsH	225	48.64		
3bwsA	433	49.04		
3ec3A	250	50.50		
1al3	324	51.67		
1iweA	457	52.50	c.37.1.10	71486
3dtbA	624	52.98		
1wwkA	307	54.82		
3li3A	314	55.72		
1ne7A	289	56.10	c.124.1.1	91833
3bc9A	599	56.46		
1lwjA	441	56.57	b.71.1.1,c.1.8.1	74303,74304
2qtkA	390	57.65		
2waeA	680	58.33		
3fy4A	537	58.88		
2vuhB	139	59.53		
1fs5A	266	59.89	c.124.1.1	65044
1yrzA	528	62.03	b.29.1.23,b.67.2.1	123948,123949
2r1fA	270	62.56		
1q7fA	286	62.75	b.68.9.1	96036
3k1qB	1027	62.95		
1r2zA	274	65.12	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
3cslA	865	65.27		
1v3hA	495	65.78	c.1.8.1	108303
1czaN	917	66.37	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
1v7wA	807	66.75	a.102.1.4,b.30.5.3	108411,108412
1kwmA	402	66.83	c.56.5.1,d.58.3.1	73079,73080
1a0rB	340	67.57	b.69.4.1	27658
1nexB	464	68.07	a.158.1.1,b.69.4.1	80443,80444
1egnA	434	68.38	b.29.1.10	59411
1jhnA	424	69.34	b.104.1.1,b.29.1.12	66722,70060
2j6iA	364	69.42		
2cduA	452	69.47		
1j31A	262	70.15	d.160.1.2	90808
3bo5A	290	70.27		
1dykA	394	72.47	b.29.1.4,b.29.1.4	24223,24224
3gq8A	609	74.30		
1ho8A	480	74.38	a.118.1.9	61107
2aaaA	484	74.39	b.71.1.1,c.1.8.1	27777,28764
3hnoA	419	74.63		
2wnfA	298	74.76		
1q2bA	434	76.42	b.29.1.10	95624
2obdA	476	76.64		
1q15A	503	77.58	c.26.2.1,d.153.1.1	95538,95539
2q83A	346	78.54		
3gg9A	352	79.51		
1rxxA	421	79.58	d.126.1.4	98061
1lqtA	456	79.61	c.3.1.1,c.4.1.1	74198,74199
3b9jC	763	80.27	d.41.1.1,d.133.1.1	155004,155005
2cfmA	561	81.52		
2hivA	621	83.02		
1kfuL	699	84.30	a.39.1.8,b.14.1.1,d.3.1.3	68571,68572,68573
8fabB	224	84.60	b.1.1.1,b.1.1.2	19773,20883
1hp1A	516	85.06	d.114.1.1,d.159.1.2	70976,70977
2agyA	361	86.88		
2hy1A	280	87.22	d.159.1.11	147437