# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	1.12e-24	d.231.1.1	86817
1h6wA	312	2.54e-08	d.231.1.1,b.108.1.1	83059,83060
1otjA	283	2.425	b.82.2.5	93517
1nx8A	273	8.157	b.82.2.8	86374
1al3	324	8.903		
2j07A	420	10.93	a.99.1.1,c.28.1.1	137891,137892
1nexB	464	12.29	a.158.1.1,b.69.4.1	80443,80444
2qcuA	501	13.00		
1khdA	345	15.75	a.46.2.1,c.27.1.1	77400,77401
8fabB	224	16.52	b.1.1.1,b.1.1.2	19773,20883
3bx4A	136	18.88		
1ne7A	289	19.29	c.124.1.1	91833
2eveA	157	19.41	b.122.1.8	132427
2ieaA	886	19.60	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
1mdaH	368	20.53	b.69.2.1	27637
2douA	376	21.58		
2we0A	286	21.71		
3fbxA	559	24.35		
1t1uA	639	24.74	c.43.1.3,c.43.1.3	119110,119111
3iohA	298	25.11		
1fnsA	196	25.99	c.62.1.1	34136
1brwA	433	26.89	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
3hcnA	359	27.20		
2gpyA	233	28.38		
2jd4A	383	31.23		
2bpqA	373	31.78		
3dsdA	349	32.17		
3g23A	274	35.34		
2x8aA	274	35.51		
1yo1A	260	35.61		
1vqqA	646	37.19	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2otuB	118	39.10		
1z8sA	146	39.60		
3he7D	242	39.86		
1pjaA	302	40.91	c.69.1.13	94758
2vuhB	139	41.60		
3d5pA	144	41.90		
1s4uX	407	45.45	b.69.4.1	112027
1a7iA	81	45.71	g.39.1.3,g.39.1.3	45143,45144
2fkkA	206	46.41		
2ijzA	428	47.32		
2jk1A	139	47.48		
1pc6A	146	47.93	d.262.1.1	94430
1vnsA	609	48.74	a.111.1.3	19061
1ogaE	252	50.34	b.1.1.1,b.1.1.2	86992,86993
2vimA	104	50.65		
2gsoA	393	51.12		
1kgcE	242	52.33	b.1.1.1,b.1.1.2	77386,77387
1n67A	359	52.41	b.2.3.4,b.2.3.4	85354,85355
2vxvH	223	52.57		
1ttzA	87	53.16	c.47.1.1	107309
1fiuA	286	54.90	c.52.1.10	33317
3hsiA	458	56.03		
1p1jA	533	56.19	c.2.1.3,d.81.1.3	87687,87688
1p22A	435	56.48	a.158.1.1,b.69.4.1	87715,87716
3h3lA	241	56.85		
2wd6A	349	57.49		
3f3qA	109	57.93		
2wnfA	298	57.94		
3f7mA	279	59.12		
2r6zA	258	59.87		
2qtcA	886	60.56	c.36.1.6,c.36.1.10,c.48.1.1	151343,151344,151345
3cssA	267	62.97		
2gxaA	274	63.22		
1up8A	598	64.34	a.111.1.2	99710
1xg8A	111	64.45	c.47.1.17	115283
2f5uA	447	64.92		
3c5vA	316	64.97		
3fesA	145	65.92		
2f51A	118	66.16		
2wgoA	98	67.12		
1xcrA	316	67.35	d.290.1.2	121860
3g4pA	244	67.77		
2axjA	242	69.53		
2vxsH	225	70.04		
3mgaA	407	71.87		
3gnjA	111	72.68		
1ijbA	202	74.40	c.62.1.1	71229
2kiiA	181	74.64		
1xo1A	291	75.62	a.60.7.1,c.120.1.2	18086,33356
3d6iA	112	75.87		
3bdwB	120	75.91		
1h30A	422	76.04	b.29.1.4,b.29.1.4	76604,76605
3iu7A	288	76.80		
3e3eA	105	76.90		
1ahlA	49	76.99	g.9.1.1	44601
3fv7A	244	78.54		
1zglP	249	79.16	b.1.1.1,b.1.1.2	125047,125048
2ftsA	419	80.04	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1tuwA	109	81.05	d.58.4.8	107346
1nnwA	252	81.62	d.159.1.5	80674
2apjA	260	82.47	c.23.10.7	127128
1pjxA	314	83.50	b.68.6.1	104167
1ep8A	112	83.87	c.47.1.1	64907
3l23A	303	84.87		
2wz9A	153	86.44		
2wadA	680	86.61		
3hhvA	110	88.48		
1vaxA	287	89.84	d.96.1.4,d.96.1.4	119910,119911