# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ocyA	198	1.62e-17	d.231.1.1	86817
1h6wA	312	3.27e-05	d.231.1.1,b.108.1.1	83059,83060
1otjA	283	1.245	b.82.2.5	93517
2v3fA	505	5.893	b.71.1.2,c.1.8.3	152453,152454
3mgaA	407	7.957		
3iurA	693	8.829		
1p22A	435	9.96	a.158.1.1,b.69.4.1	87715,87716
1zpdA	568	10.04	c.31.1.3,c.36.1.5,c.36.1.9	31741,31785,31786
3e1tA	512	11.80		
2sqcA	631	14.16	a.102.4.2,a.102.4.2	18854,18855
1tib	269	14.69		
2j4dA	525	15.94		
1pwgA	349	16.62	e.3.1.1	104340
2ieaA	886	18.35	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
2yskA	145	19.08		
3gffA	331	19.51		
2j07A	420	20.04	a.99.1.1,c.28.1.1	137891,137892
1z8sA	146	20.53		
3cgvA	397	21.96		
1w7lA	422	23.63	c.67.1.1	109226
1pjxA	314	26.33	b.68.6.1	104167
3iujA	693	29.01		
2wadA	680	30.57		
2jbvA	546	30.81		
3hsiA	458	31.03		
2ckfA	454	31.82		
2zq0A	738	32.27		
1gqiA	708	37.73	c.1.8.10,d.92.2.2	76279,76280
2gbwA	454	38.10		
2zxdA	455	38.62		
2waeA	680	39.38		
1tezA	474	40.80	a.99.1.1,c.28.1.1	112409,112410
1sdeA	347	42.35	e.3.1.1	112073
1wu4A	396	43.76	a.102.1.2	121272
3f7mA	279	44.27		
1v3hA	495	45.35	c.1.8.1	108303
1ygeA	839	45.83	a.119.1.1,b.12.1.1	19234,23634
1np7A	489	48.04	a.99.1.1,c.28.1.1	80677,80678
1i7qA	519	49.78	d.161.1.1	61901
2hp0A	466	50.62		
2f71A	298	51.07	c.45.1.2	133070
1nx8A	273	51.28	b.82.2.8	86374
1nwzA	125	51.49	d.110.3.1	86370
2jerA	389	51.72	d.126.1.6	148019
2f5vA	595	53.68	c.3.1.2,d.16.1.1	133010,133011
2vuhB	139	54.76		
2je8A	848	57.46	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	147998,147999,148000,148001,148002
1o4sA	389	57.96	c.67.1.1	86620
1ewqA	765	59.26	a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1	19069,32383,33740,39743
1ciiA	602	62.03	f.1.1.1,h.4.3.1	43381,45787
3bneA	839	62.82	a.119.1.1,b.12.1.1	155436,155437
1nr0A	611	63.65	b.69.4.1,b.69.4.1	86078,86079
3lq2A	886	63.75		
1mkfA	382	65.15	b.116.1.1	79232
3pyp	125	65.47		
1qdlA	422	67.98	d.161.1.1	42088
1xttA	216	68.30	c.61.1.1	122300
2drwA	363	68.43	e.3.1.1	131674
1wxrA	1048	68.54		
1nthA	458	68.64	c.1.25.1	80730
2jk1A	139	69.18		
1t1uA	639	69.23	c.43.1.3,c.43.1.3	119110,119111
1h30A	422	70.70	b.29.1.4,b.29.1.4	76604,76605
2gifA	1057	70.86		
2g5fA	450	72.73	d.161.1.1	134654
2x1dA	357	73.03		
1n9eA	787	73.30	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2q9fA	456	73.30		
1l0gA	358	74.48	e.3.1.1	73400
1mzuA	129	74.92	d.110.3.1	79714
3lycA	241	75.25		
3bzmA	431	77.93	d.161.1.1	155783
3kr4A	528	78.23		
2d4wA	504	78.86		
1qi9A	556	80.71	a.111.1.2	19053
2zxeA	1028	82.17		
2fn0A	437	82.46	d.161.1.1	133799
1yge	839	82.77		
1eo9A	209	83.64	b.3.6.1	22731
2q83A	346	83.97		
2djiA	590	84.51	c.31.1.3,c.36.1.5,c.36.1.9	131544,131545,131546
2pbnA	313	84.65		
2jd4A	383	85.10		
3iohA	298	85.72		
2eveA	157	86.38	b.122.1.8	132427
3pcgA	200	88.25	b.3.6.1	22647
3ivmA	693	88.78		
2o8bB	1022	89.49