Best Alignments for T0628

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2e2oA	2.7741e-02	2e2oA/T0628-2e2oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2aa4A	7.8429e-02	2aa4A/T0628-2aa4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.10 c.55.1.10
2ap1A	1.8111e-01	2ap1A/T0628-2ap1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.10 c.55.1.10
1zbsA	2.1534e-01	1zbsA/T0628-1zbsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5 c.55.1.5
3htvA	2.2829e-01	3htvA/T0628-3htvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gupA	2.3081e-01	2gupA/T0628-2gupA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.10 c.55.1.10
1sz2A	2.9515e-01	1sz2A/T0628-1sz2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.7
1zc6A	3.1033e-01	1zc6A/T0628-1zc6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5 c.55.1.5
2qm1A	3.4391e-01	2qm1A/T0628-2qm1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ch5A	4.9496e-01	2ch5A/T0628-2ch5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5 c.55.1.5
2gtdA	5.3692e-01	2gtdA/T0628-2gtdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.13 c.55.1.13
1xc3A	6.2791e-01	1xc3A/T0628-1xc3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.10 c.55.1.10
1z6rA	7.5997e-01	1z6rA/T0628-1z6rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.63 c.55.1.10 c.55.1.10
1huxA	8.4535e-01	1huxA/T0628-1huxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.5
1woqA	9.6560e-01	1woqA/T0628-1woqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.10 c.55.1.10
3lm2A	1.0429e+00	3lm2A/T0628-3lm2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hoeA	1.1778e+00	2hoeA/T0628-2hoeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.63 c.55.1.10 c.55.1.10
3mcpA	1.5365e+00	3mcpA/T0628-3mcpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h3gX	1.8456e+00	2h3gX/T0628-2h3gX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bexA	2.6514e+00	3bexA/T0628-3bexA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.1.13 c.55.1.13

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001