# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.03711 c.55.1.5 61278 3i8bA 515 0.3241 2zf5O 497 0.3551 3gbtA 504 0.4995 3htvA 310 0.5626 1bu6O 501 0.6148 c.55.1.4,c.55.1.4 33499,33500 2uytA 489 0.6363 3ll3A 504 1.011 2itmA 484 1.165 3flcO 518 1.198 2w40A 503 1.209 3hz6A 511 1.454 2e2oA 299 1.462 1zbsA 291 1.506 c.55.1.5,c.55.1.5 124870,124871 3h46O 506 1.606 3ifrA 508 1.679 2ch5A 347 1.705 c.55.1.5,c.55.1.5 130453,130454 3d7eO 505 1.731 2gupA 292 1.832 c.55.1.10,c.55.1.10 135744,135745 3h3nO 506 1.871 3h6eA 482 2.017 2d4wA 504 2.024 3ezwA 526 2.176 1zc6A 305 2.269 c.55.1.5,c.55.1.5 124888,124889 1glcG 501 2.452 c.55.1.4,c.55.1.4 33519,33520 1r59O 505 3.178 c.55.1.4,c.55.1.4 111697,111698 1sz2A 332 3.896 c.55.1.7 112169 3mcpA 366 4.722 3gg4A 554 4.820 2qm1A 326 4.920 1glaG 501 5.046 c.55.1.4,c.55.1.4 33507,33508 2hoeA 380 6.076 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1zxoA 291 6.536 c.55.1.5,c.55.1.5 125784,125785 3epqA 302 8.638 1xc3A 302 8.967 c.55.1.10,c.55.1.10 115102,115103 3bexA 249 9.043 c.55.1.13,c.55.1.13 155198,155199 3l0qA 554 11.04 3bp8A 406 11.39 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2aa4A 289 12.09 c.55.1.10,c.55.1.10 126465,126466 1z6rA 406 13.89 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3lm2A 226 16.72 3f0hA 376 16.91 3jvpA 572 17.19 3fpkA 251 18.55 3ce6A 494 18.69 1ebdA 455 18.93 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2gtdA 251 19.13 c.55.1.13,c.55.1.13 135634,135635 2h3gX 268 22.19 1q1rA 431 23.35 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3n58A 464 24.06 2x58A 727 24.34 2q2rA 373 24.37 3ii4A 466 24.58 2ap1A 327 25.90 c.55.1.10,c.55.1.10 127108,127109 1xhcA 367 26.55 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3h8qA 114 29.95 1ig8A 486 30.67 c.55.1.3,c.55.1.3 64746,64747 1xwfA 431 32.55 c.2.1.4,c.23.12.3 122392,122393 1nhpA 447 34.50 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 3dhyA 495 36.09 1qg0A 308 36.32 b.43.4.2,c.25.1.1 25639,31529 2r6hA 290 36.46 1gvhA 396 37.11 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 3lb8A 436 38.53 3kljA 385 38.65 3icsA 588 39.94 3iwaA 472 39.98 2bsaA 303 40.07 b.43.4.2,c.25.1.1 129078,129079 1ogiA 303 40.65 b.43.4.2,c.25.1.1 92914,92915 1lvlA 458 41.30 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2cduA 452 41.31 3glqA 494 42.15 3ef6A 410 42.18 3g1uA 437 42.45 2ok8A 316 43.88 2pi1A 334 44.10 1fdr 248 44.19 2eixA 243 44.88 2gqwA 408 45.28 3aapA 353 47.20 1mgqA 83 50.61 b.38.1.1 79099 2v3aA 384 51.79 3grsA 478 52.44 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2pxxA 215 52.63 1nhsA 447 52.65 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1yqzA 438 53.45 1gpjA 404 53.66 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1mioB 458 53.70 c.92.2.3 35602 2wtbA 725 53.77 2pl5A 366 54.78 c.69.1.40 149611 1q0qA 406 55.54 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2yhxA 457 59.63 i.12.1.1 46024 3h4kA 598 59.65 2e7pA 116 61.34 2qdxA 257 62.19 2wnhA 418 64.05 3fg2P 404 66.88 1d7yA 408 67.90 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1cqxA 403 68.76 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 3ez2A 398 69.01 3do5A 327 71.49 3mdqA 315 71.57 3ic9A 492 72.85 2yquA 455 73.96 1fdrA 248 74.26 b.43.4.2,c.25.1.1 25653,31543 3dghA 483 75.33 2bgiA 272 75.47 1qhaA 917 76.35 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 2bmwA 304 79.28 b.43.4.2,c.25.1.1 128815,128816 1qh0A 295 79.39 b.43.4.2,c.25.1.1 68891,68892 3dk9A 478 79.50 3k5iA 403 79.96 1fnc 314 79.97 2zgyA 320 80.65 c.55.1.1,c.55.1.1 154425,154426 1t6cA 315 81.55 c.55.1.8,c.55.1.8 106558,106559 1woqA 267 82.22 c.55.1.10,c.55.1.10 109462,109463 1f0yA 302 84.89 a.100.1.3,c.2.1.6 18793,30197 2ht9A 146 85.60 1mwmA 320 86.01 c.55.1.1,c.55.1.1 79580,79581 1nhp 447 87.53