# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.02137 c.55.1.5 61278 3i8bA 515 0.1457 1bu6O 501 0.2683 c.55.1.4,c.55.1.4 33499,33500 3gbtA 504 0.2706 2uytA 489 0.3125 3flcO 518 0.4488 3hz6A 511 0.5070 2w40A 503 0.5783 3h46O 506 0.5935 2zf5O 497 0.6508 3h3nO 506 0.6575 3d7eO 505 0.6774 3ll3A 504 0.7050 1zbsA 291 0.7150 c.55.1.5,c.55.1.5 124870,124871 3ifrA 508 0.8117 2d4wA 504 0.8299 2itmA 484 0.8691 1zc6A 305 0.8953 c.55.1.5,c.55.1.5 124888,124889 3h6eA 482 1.034 2e2oA 299 1.058 3ezwA 526 1.080 3htvA 310 1.118 3gg4A 554 1.133 1glcG 501 1.255 c.55.1.4,c.55.1.4 33519,33520 1glaG 501 1.748 c.55.1.4,c.55.1.4 33507,33508 2ch5A 347 1.767 c.55.1.5,c.55.1.5 130453,130454 2qm1A 326 1.978 3l0qA 554 2.295 2gupA 292 2.506 c.55.1.10,c.55.1.10 135744,135745 3epqA 302 2.635 3mcpA 366 3.845 1sz2A 332 4.031 c.55.1.7 112169 2hoeA 380 4.760 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1xc3A 302 5.069 c.55.1.10,c.55.1.10 115102,115103 3bp8A 406 5.271 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1z6rA 406 5.893 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2aa4A 289 6.209 c.55.1.10,c.55.1.10 126465,126466 3jvpA 572 7.141 1zxoA 291 8.902 c.55.1.5,c.55.1.5 125784,125785 2ap1A 327 9.047 c.55.1.10,c.55.1.10 127108,127109 1ig8A 486 9.906 c.55.1.3,c.55.1.3 64746,64747 3ce6A 494 10.30 3lm2A 226 11.24 3n58A 464 11.39 3fpkA 251 11.61 2bsaA 303 11.92 b.43.4.2,c.25.1.1 129078,129079 2ok8A 316 12.24 2x58A 727 12.58 3glqA 494 15.00 1r59O 505 15.34 c.55.1.4,c.55.1.4 111697,111698 3bexA 249 16.48 c.55.1.13,c.55.1.13 155198,155199 2q2rA 373 18.74 3g1uA 437 19.18 1ogiA 303 19.27 b.43.4.2,c.25.1.1 92914,92915 1xwfA 431 20.22 c.2.1.4,c.23.12.3 122392,122393 1fdr 248 20.41 1q1rA 431 20.70 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1qg0A 308 21.26 b.43.4.2,c.25.1.1 25639,31529 3dhyA 495 21.80 1qh0A 295 22.21 b.43.4.2,c.25.1.1 68891,68892 2yhxA 457 24.33 i.12.1.1 46024 1fnc 314 27.46 2yhx 457 30.05 3aapA 353 30.43 1mioB 458 30.46 c.92.2.3 35602 1bx1A 314 32.83 b.43.4.2,c.25.1.1 25629,31519 1gpjA 404 33.58 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2gtdA 251 33.91 c.55.1.13,c.55.1.13 135634,135635 2bgiA 272 33.98 1mgqA 83 35.92 b.38.1.1 79099 2qdxA 257 37.00 1qhaA 917 39.74 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 3f0hA 376 40.36 3ez2A 398 40.89 1xhcA 367 41.11 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2wtbA 725 42.06 3icsA 588 43.16 2bmwA 304 44.68 b.43.4.2,c.25.1.1 128815,128816 1woqA 267 45.82 c.55.1.10,c.55.1.10 109462,109463 2wnhA 418 46.20 1v4sA 455 47.17 c.55.1.3,c.55.1.3 100309,100310 1v8bA 479 48.07 c.2.1.4,c.23.12.3 113564,113565 2gqwA 408 48.88 1cqeA 580 48.95 a.93.1.2,g.3.11.1 18703,44246 1fdrA 248 50.05 b.43.4.2,c.25.1.1 25653,31543 3ii4A 466 50.29 1go2A 304 53.78 b.43.4.2,c.25.1.1 76243,76244 2h3gX 268 53.92 1mwmA 320 54.63 c.55.1.1,c.55.1.1 79580,79581 3lb8A 436 55.44 2eixA 243 58.23 1nhpA 447 60.22 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2pl5A 366 61.24 c.69.1.40 149611 3k5iA 403 61.64 3d64A 494 62.92 1d4fA 431 63.52 c.2.1.4,c.23.12.3 30110,31370 3cj1A 456 64.01 3f8dA 323 66.70 2r6hA 290 68.72 1e4fT 419 68.95 c.55.1.1,c.55.1.1 33453,33454 2cduA 452 70.30 1dgkN 917 70.76 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 1gvhA 396 72.07 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 3h4kA 598 72.60 1a8pA 258 75.29 b.43.4.2,c.25.1.1 25654,31544 1f0yA 302 77.04 a.100.1.3,c.2.1.6 18793,30197 2v3aA 384 77.17 1trbA 320 78.72 c.3.1.5,c.3.1.5 30529,30530 1qh8B 519 79.82 c.92.2.3 35634 3f9mA 470 81.94 3fg2P 404 82.01 3ef6A 410 82.33 2pi1A 334 82.60 2hczX 245 84.38 3mdqA 315 85.45 2pxxA 215 86.33