# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2644 c.55.1.5 61278 1bu6O 501 1.146 c.55.1.4,c.55.1.4 33499,33500 2zf5O 497 1.210 3gbtA 504 1.255 2uytA 489 1.664 3i8bA 515 1.929 3flcO 518 2.152 2itmA 484 2.804 3ll3A 504 2.939 1r59O 505 3.020 c.55.1.4,c.55.1.4 111697,111698 3ifrA 508 3.255 2w40A 503 3.292 2qm1A 326 3.384 3hz6A 511 3.569 3h3nO 506 3.602 2d4wA 504 3.763 3h46O 506 3.923 3h6eA 482 4.032 3d7eO 505 4.233 2hoeA 380 5.068 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1zbsA 291 5.122 c.55.1.5,c.55.1.5 124870,124871 1zc6A 305 5.187 c.55.1.5,c.55.1.5 124888,124889 3gg4A 554 5.234 2e2oA 299 5.607 3grsA 478 6.072 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 3htvA 310 6.249 3mcpA 366 6.301 3ezwA 526 6.554 1glaG 501 7.444 c.55.1.4,c.55.1.4 33507,33508 2ch5A 347 8.334 c.55.1.5,c.55.1.5 130453,130454 3n58A 464 10.22 1glcG 501 10.69 c.55.1.4,c.55.1.4 33519,33520 3epqA 302 11.48 3l0qA 554 11.65 2gupA 292 12.24 c.55.1.10,c.55.1.10 135744,135745 3bp8A 406 12.27 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2bsaA 303 12.92 b.43.4.2,c.25.1.1 129078,129079 1zxoA 291 14.12 c.55.1.5,c.55.1.5 125784,125785 3ce6A 494 14.74 2ok8A 316 17.63 3glqA 494 17.72 1q1rA 431 18.24 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1z6rA 406 18.55 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1gpjA 404 18.57 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1mgqA 83 19.12 b.38.1.1 79099 1sz2A 332 19.45 c.55.1.7 112169 3g1uA 437 21.30 1xwfA 431 22.99 c.2.1.4,c.23.12.3 122392,122393 3dhyA 495 24.17 2x58A 727 24.20 3jvpA 572 24.98 1d7yA 408 25.92 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1mioB 458 28.05 c.92.2.3 35602 2gqwA 408 28.38 3dk9A 478 28.49 2aa4A 289 29.26 c.55.1.10,c.55.1.10 126465,126466 3h8qA 114 29.82 2qdxA 257 30.76 3icsA 588 31.23 1ig8A 486 31.77 c.55.1.3,c.55.1.3 64746,64747 2pi1A 334 34.61 1xc3A 302 34.63 c.55.1.10,c.55.1.10 115102,115103 2ap1A 327 34.83 c.55.1.10,c.55.1.10 127108,127109 2fq6A 415 35.48 c.67.1.3 133939 1ebdA 455 36.44 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1qg0A 308 37.47 b.43.4.2,c.25.1.1 25639,31529 3ef6A 410 37.74 2bgiA 272 38.61 2v3aA 384 38.88 1yqzA 438 39.21 3ba1A 333 41.41 2eq6A 464 42.68 1cl2A 395 42.84 c.67.1.3 34397 1xhcA 367 42.97 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3kljA 385 43.39 1v8bA 479 43.85 c.2.1.4,c.23.12.3 113564,113565 2yquA 455 44.36 3lb8A 436 47.20 3lm2A 226 48.65 2f3yA 148 49.01 a.39.1.5 146994 1g8iA 190 51.85 a.39.1.5 60363 1p77A 272 53.50 c.2.1.7,c.58.1.5 94214,94215 1a8pA 258 54.13 b.43.4.2,c.25.1.1 25654,31544 1d4fA 431 54.52 c.2.1.4,c.23.12.3 30110,31370 2r6hA 290 54.81 2e7pA 116 55.17 2yhxA 457 56.54 i.12.1.1 46024 3ii4A 466 57.89 1mioA 534 58.19 c.92.2.3 35601 2cduA 452 59.17 3fpkA 251 60.45 1bx1A 314 62.44 b.43.4.2,c.25.1.1 25629,31519 1f0yA 302 63.46 a.100.1.3,c.2.1.6 18793,30197 3d64A 494 64.44 3ic9A 492 64.88 3fz9A 112 67.03 3g91A 265 71.86 1e3jA 352 72.33 b.35.1.2,c.2.1.1 24765,29781 1q0qA 406 73.47 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1qh8B 519 74.43 c.92.2.3 35634 3iwaA 472 74.50 1gvhA 396 75.06 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1nhpA 447 75.72 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1lvlA 458 79.34 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1m1nA 491 79.45 c.92.2.3 78417 2eixA 243 80.18 2o4cA 380 80.30 3dghA 483 80.38 2pxxA 215 81.59 3h4kA 598 82.09 2wtbA 725 84.32 1qh8A 478 85.34 c.92.2.3 35633 2j4jA 226 86.09 2i7nA 360 86.49 c.55.1.14,c.55.1.14 147547,147548 2q2rA 373 86.53 1fl2A 310 88.61 c.3.1.5,c.3.1.5 59869,59870