# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.1618 c.55.1.5 61278 3gbtA 504 0.3972 2zf5O 497 0.6825 3ll3A 504 1.165 2uytA 489 1.340 2itmA 484 1.373 3i8bA 515 1.427 1bu6O 501 1.562 c.55.1.4,c.55.1.4 33499,33500 3hz6A 511 1.591 2ch5A 347 2.243 c.55.1.5,c.55.1.5 130453,130454 1zc6A 305 2.348 c.55.1.5,c.55.1.5 124888,124889 3h6eA 482 2.454 1zbsA 291 2.902 c.55.1.5,c.55.1.5 124870,124871 3flcO 518 2.929 2e2oA 299 3.049 3ifrA 508 3.206 3mcpA 366 3.275 2gupA 292 3.475 c.55.1.10,c.55.1.10 135744,135745 2w40A 503 3.612 2d4wA 504 3.810 1glcG 501 3.946 c.55.1.4,c.55.1.4 33519,33520 2qm1A 326 6.147 3h46O 506 6.274 3gg4A 554 6.376 2hoeA 380 7.429 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1sz2A 332 7.480 c.55.1.7 112169 3ezwA 526 7.496 3h3nO 506 8.568 3l0qA 554 9.113 3htvA 310 9.593 3d7eO 505 11.93 2bsaA 303 14.28 b.43.4.2,c.25.1.1 129078,129079 1zxoA 291 16.16 c.55.1.5,c.55.1.5 125784,125785 1glaG 501 16.95 c.55.1.4,c.55.1.4 33507,33508 3fpkA 251 17.23 1z6rA 406 17.57 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1qh0A 295 18.22 b.43.4.2,c.25.1.1 68891,68892 1xc3A 302 20.37 c.55.1.10,c.55.1.10 115102,115103 2aa4A 289 21.20 c.55.1.10,c.55.1.10 126465,126466 1r59O 505 23.02 c.55.1.4,c.55.1.4 111697,111698 3grsA 478 26.86 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 3epqA 302 27.76 3bp8A 406 28.22 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1mgqA 83 30.34 b.38.1.1 79099 2pi1A 334 32.06 2pxxA 215 33.14 2x58A 727 37.18 1xhcA 367 37.48 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3jvpA 572 38.84 2yhxA 457 40.72 i.12.1.1 46024 1mwmA 320 40.81 c.55.1.1,c.55.1.1 79580,79581 1ogiA 303 40.81 b.43.4.2,c.25.1.1 92914,92915 1qg0A 308 42.99 b.43.4.2,c.25.1.1 25639,31529 1ig8A 486 44.80 c.55.1.3,c.55.1.3 64746,64747 1ebdA 455 45.85 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 3g1uA 437 46.07 1fdr 248 46.32 3ce6A 494 48.81 3lm2A 226 49.83 2ap1A 327 50.52 c.55.1.10,c.55.1.10 127108,127109 3n58A 464 54.36 1q1rA 431 58.99 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2yhx 457 62.02 2q2rA 373 72.76 1x82A 190 72.95 b.82.1.7 114955 1w34A 304 73.65 b.43.4.2,c.25.1.1 120620,120621 2r6hA 290 74.81 3do5A 327 75.30 3bexA 249 76.06 c.55.1.13,c.55.1.13 155198,155199 1mioB 458 78.05 c.92.2.3 35602 3glqA 494 78.08 1fl2A 310 79.86 c.3.1.5,c.3.1.5 59869,59870 1b2rA 304 81.14 b.43.4.2,c.25.1.1 25648,31538 1ljoA 77 84.72 b.38.1.1 73941 3ii4A 466 86.44 2z0rA 103 86.95 2bgiA 272 87.00