# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2127 c.55.1.5 61278 3gbtA 504 0.7671 2zf5O 497 1.310 2uytA 489 1.397 3ll3A 504 1.464 3i8bA 515 2.401 1zbsA 291 2.481 c.55.1.5,c.55.1.5 124870,124871 1bu6O 501 2.522 c.55.1.4,c.55.1.4 33499,33500 2itmA 484 2.662 3hz6A 511 2.991 3h6eA 482 3.640 2ch5A 347 3.927 c.55.1.5,c.55.1.5 130453,130454 3flcO 518 4.124 1zc6A 305 4.482 c.55.1.5,c.55.1.5 124888,124889 2e2oA 299 4.619 2w40A 503 5.439 3ifrA 508 5.987 2d4wA 504 6.105 2gupA 292 6.931 c.55.1.10,c.55.1.10 135744,135745 3h46O 506 8.698 3h3nO 506 9.748 1glcG 501 9.800 c.55.1.4,c.55.1.4 33519,33520 1sz2A 332 9.942 c.55.1.7 112169 3mcpA 366 10.07 3ezwA 526 10.67 3d7eO 505 11.95 3gg4A 554 12.57 2qm1A 326 12.81 2hoeA 380 13.67 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3htvA 310 14.93 3l0qA 554 16.05 1zxoA 291 17.29 c.55.1.5,c.55.1.5 125784,125785 3fpkA 251 17.76 1xhcA 367 20.70 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1ebdA 455 21.33 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2bsaA 303 21.70 b.43.4.2,c.25.1.1 129078,129079 2x58A 727 21.76 1xc3A 302 23.24 c.55.1.10,c.55.1.10 115102,115103 3epqA 302 25.96 3grsA 478 27.15 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1z6rA 406 27.44 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1qh0A 295 28.69 b.43.4.2,c.25.1.1 68891,68892 1r59O 505 31.37 c.55.1.4,c.55.1.4 111697,111698 2pi1A 334 33.01 2aa4A 289 33.88 c.55.1.10,c.55.1.10 126465,126466 1glaG 501 34.19 c.55.1.4,c.55.1.4 33507,33508 1q1rA 431 36.10 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1fl2A 310 37.74 c.3.1.5,c.3.1.5 59869,59870 3ce6A 494 38.12 2pxxA 215 38.35 1ogiA 303 40.45 b.43.4.2,c.25.1.1 92914,92915 3bp8A 406 40.51 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3dk9A 478 41.13 1fdr 248 41.26 3n58A 464 42.87 3g1uA 437 44.64 3ii4A 466 45.60 3do5A 327 46.43 1qg0A 308 48.17 b.43.4.2,c.25.1.1 25639,31529 3glqA 494 50.92 3lm2A 226 51.41 2r6hA 290 51.51 1mgqA 83 52.11 b.38.1.1 79099 3jvpA 572 52.50 3bexA 249 52.62 c.55.1.13,c.55.1.13 155198,155199 1mioB 458 55.08 c.92.2.3 35602 2eq6A 464 56.53 1gvhA 396 56.62 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2yquA 455 56.98 2eixA 243 58.42 1mwmA 320 60.24 c.55.1.1,c.55.1.1 79580,79581 2bmwA 304 62.67 b.43.4.2,c.25.1.1 128815,128816 1f0yA 302 64.38 a.100.1.3,c.2.1.6 18793,30197 2z0rA 103 65.00 1trbA 320 67.05 c.3.1.5,c.3.1.5 30529,30530 1lvlA 458 67.19 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2yhxA 457 68.87 i.12.1.1 46024 1d7yA 408 72.58 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2gqwA 408 73.60 2r9zA 463 74.32 3ef6A 410 74.59 3f0hA 376 75.58 3kljA 385 77.37 2bgiA 272 77.63 2ap1A 327 79.37 c.55.1.10,c.55.1.10 127108,127109 3f8dA 323 80.88 3ic9A 492 81.51 2ok8A 316 83.25 2q2rA 373 83.72 1ez1A 392 83.84 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1fnc 314 83.88 3h4kA 598 84.15 1fdrA 248 86.55 b.43.4.2,c.25.1.1 25653,31543 1xwfA 431 88.39 c.2.1.4,c.23.12.3 122392,122393 3dhyA 495 88.59 2grrB 170 89.06 a.118.12.1 147168