# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2828 c.55.1.5 61278 3gbtA 504 0.5657 2zf5O 497 0.9389 2uytA 489 1.034 3ll3A 504 1.439 2itmA 484 2.221 3i8bA 515 2.438 1bu6O 501 2.767 c.55.1.4,c.55.1.4 33499,33500 3hz6A 511 3.002 3h6eA 482 3.463 3flcO 518 3.671 1zbsA 291 4.137 c.55.1.5,c.55.1.5 124870,124871 2w40A 503 5.362 1zc6A 305 5.710 c.55.1.5,c.55.1.5 124888,124889 2e2oA 299 5.747 2ch5A 347 5.851 c.55.1.5,c.55.1.5 130453,130454 3ifrA 508 5.938 2bsaA 303 6.173 b.43.4.2,c.25.1.1 129078,129079 2d4wA 504 6.228 1qh0A 295 6.397 b.43.4.2,c.25.1.1 68891,68892 3h46O 506 7.178 1glcG 501 8.499 c.55.1.4,c.55.1.4 33519,33520 3h3nO 506 8.691 1sz2A 332 8.979 c.55.1.7 112169 2qm1A 326 10.23 2gupA 292 10.40 c.55.1.10,c.55.1.10 135744,135745 3ezwA 526 10.86 3d7eO 505 11.41 3gg4A 554 12.14 3fpkA 251 12.87 3mcpA 366 12.88 1qg0A 308 14.69 b.43.4.2,c.25.1.1 25639,31529 3l0qA 554 15.08 1ogiA 303 18.50 b.43.4.2,c.25.1.1 92914,92915 1zxoA 291 19.00 c.55.1.5,c.55.1.5 125784,125785 1r59O 505 19.86 c.55.1.4,c.55.1.4 111697,111698 2hoeA 380 20.52 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1ebdA 455 21.63 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1bx1A 314 27.16 b.43.4.2,c.25.1.1 25629,31519 3epqA 302 27.48 3htvA 310 27.59 1glaG 501 27.88 c.55.1.4,c.55.1.4 33507,33508 1z6rA 406 28.17 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2aa4A 289 28.54 c.55.1.10,c.55.1.10 126465,126466 1b2rA 304 28.63 b.43.4.2,c.25.1.1 25648,31538 1fnc 314 29.46 1xhcA 367 32.65 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2ok8A 316 33.00 3grsA 478 34.09 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1xc3A 302 35.00 c.55.1.10,c.55.1.10 115102,115103 1fdr 248 36.54 1w34A 304 37.93 b.43.4.2,c.25.1.1 120620,120621 1cqxA 403 38.82 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 3do5A 327 38.99 2bmwA 304 42.73 b.43.4.2,c.25.1.1 128815,128816 3jvpA 572 44.59 3dk9A 478 45.35 1mgqA 83 47.98 b.38.1.1 79099 2pxxA 215 52.55 1q1rA 431 54.45 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3bp8A 406 54.83 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3ce6A 494 56.06 1go2A 304 56.83 b.43.4.2,c.25.1.1 76243,76244 1mwmA 320 56.88 c.55.1.1,c.55.1.1 79580,79581 2eq6A 464 58.73 1x82A 190 60.06 b.82.1.7 114955 2x58A 727 60.92 2eixA 243 60.95 2yhxA 457 62.19 i.12.1.1 46024 3lm2A 226 62.86 1fl2A 310 64.04 c.3.1.5,c.3.1.5 59869,59870 2r9zA 463 64.32 1mioB 458 65.98 c.92.2.3 35602 2q2rA 373 67.09 2r6hA 290 68.00 1fdrA 248 69.17 b.43.4.2,c.25.1.1 25653,31543 3g1uA 437 69.57 2gqwA 408 70.21 3ii4A 466 70.36 2pi1A 334 72.13 3n58A 464 74.20 3bexA 249 74.45 c.55.1.13,c.55.1.13 155198,155199 2z0rA 103 74.83 1gvhA 396 75.28 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2grrB 170 81.39 a.118.12.1 147168 2ap1A 327 83.46 c.55.1.10,c.55.1.10 127108,127109 1ig8A 486 84.93 c.55.1.3,c.55.1.3 64746,64747 2yquA 455 89.67