# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.02747 c.55.1.5 61278 3gbtA 504 0.2196 3flcO 518 0.2357 2zf5O 497 0.2360 1bu6O 501 0.2518 c.55.1.4,c.55.1.4 33499,33500 1glcG 501 0.3911 c.55.1.4,c.55.1.4 33519,33520 2w40A 503 0.3974 1zbsA 291 0.4599 c.55.1.5,c.55.1.5 124870,124871 2e2oA 299 0.5727 2ch5A 347 0.5952 c.55.1.5,c.55.1.5 130453,130454 1r59O 505 0.6183 c.55.1.4,c.55.1.4 111697,111698 3h46O 506 0.6573 1zc6A 305 0.7094 c.55.1.5,c.55.1.5 124888,124889 2itmA 484 0.7705 3gg4A 554 0.8157 3ll3A 504 0.8827 3i8bA 515 1.122 3hz6A 511 1.158 2d4wA 504 1.212 2bsaA 303 1.255 b.43.4.2,c.25.1.1 129078,129079 1glaG 501 1.431 c.55.1.4,c.55.1.4 33507,33508 2uytA 489 1.455 3ifrA 508 1.520 3h3nO 506 1.607 3h6eA 482 1.672 1qg0A 308 1.781 b.43.4.2,c.25.1.1 25639,31529 1qh0A 295 2.528 b.43.4.2,c.25.1.1 68891,68892 1bx1A 314 2.835 b.43.4.2,c.25.1.1 25629,31519 3l0qA 554 2.913 3d7eO 505 3.451 3ezwA 526 3.494 2ok8A 316 4.095 2q2rA 373 4.920 1zxoA 291 5.189 c.55.1.5,c.55.1.5 125784,125785 1go2A 304 5.334 b.43.4.2,c.25.1.1 76243,76244 1fnc 314 5.740 1sz2A 332 6.421 c.55.1.7 112169 3mcpA 366 6.845 1ogiA 303 7.647 b.43.4.2,c.25.1.1 92914,92915 3cj1A 456 7.682 3jvpA 572 8.307 1b2rA 304 8.458 b.43.4.2,c.25.1.1 25648,31538 3htvA 310 10.45 1w34A 304 11.38 b.43.4.2,c.25.1.1 120620,120621 1xc3A 302 12.66 c.55.1.10,c.55.1.10 115102,115103 3lm2A 226 13.49 3grsA 478 13.69 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 3ef6A 410 14.12 2gqwA 408 15.79 3lb8A 436 16.75 2aa4A 289 19.09 c.55.1.10,c.55.1.10 126465,126466 3kljA 385 19.63 2qm1A 326 19.96 1ig8A 486 24.04 c.55.1.3,c.55.1.3 64746,64747 2yhxA 457 24.11 i.12.1.1 46024 3aapA 353 24.44 1d7yA 408 24.67 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1e4fT 419 25.55 c.55.1.1,c.55.1.1 33453,33454 1fndA 314 26.10 b.43.4.2,c.25.1.1 25626,31516 1z6rA 406 27.68 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2h3gX 268 28.76 1dl2A 511 29.83 a.102.2.1 18844 1xhcA 367 32.95 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2eixA 243 34.06 3icsA 588 35.37 2r6hA 290 36.35 1t6cA 315 36.94 c.55.1.8,c.55.1.8 106558,106559 1ep3B 262 37.98 b.43.4.2,c.25.1.3 25664,31554 3iwaA 472 38.34 1v4sA 455 38.98 c.55.1.3,c.55.1.3 100309,100310 1u6zA 513 39.99 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2r9zA 463 40.21 2cduA 452 43.18 2z8zA 617 44.22 3epqA 302 47.37 2o2cA 613 47.84 2a6aA 218 49.33 c.55.1.9,c.55.1.9 126231,126232 3fpkA 251 51.37 2fk6A 320 52.02 d.157.1.7 133646 1qhaA 917 55.59 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 2b5oA 402 56.71 2iwaA 266 56.95 1lhpA 312 58.88 c.72.1.5 77960 3ipjA 95 60.22 2bmwA 304 61.97 b.43.4.2,c.25.1.1 128815,128816 2eq6A 464 62.66 1mwmA 320 65.38 c.55.1.1,c.55.1.1 79580,79581 3f9mA 470 65.53 1ep2B 261 65.57 b.43.4.2,c.25.1.3 25666,31556 3lo8A 311 66.43 2yquA 455 67.00 2bgiA 272 67.65 1nhp 447 69.37 1mwyA 73 69.52 d.58.17.1 79616 2hoeA 380 69.57 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1dgkN 917 70.65 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 3fziA 265 70.86 2cu2A 337 75.36 b.81.4.1,c.68.1.20 146426,146427 1jb9A 316 78.24 b.43.4.2,c.25.1.1 62840,62841 2jc4A 256 80.38 2fq6A 415 83.39 c.67.1.3 133939 3ljkA 543 86.54 1u84A 90 86.62 a.230.1.1 113114 1gesA 450 87.61 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2yhx 457 88.98