# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2204 c.55.1.5 61278 2zf5O 497 0.6225 3gbtA 504 0.7158 1bu6O 501 0.7447 c.55.1.4,c.55.1.4 33499,33500 3i8bA 515 0.7811 2uytA 489 0.8933 3flcO 518 1.065 2itmA 484 1.116 2w40A 503 1.612 2d4wA 504 2.029 3ll3A 504 2.237 3hz6A 511 2.363 3h6eA 482 2.412 3ezwA 526 2.495 3ifrA 508 2.509 3h46O 506 2.544 3d7eO 505 3.141 3h3nO 506 3.202 2e2oA 299 3.303 1glcG 501 3.346 c.55.1.4,c.55.1.4 33519,33520 3gg4A 554 3.479 1glaG 501 3.961 c.55.1.4,c.55.1.4 33507,33508 2qm1A 326 4.306 2ch5A 347 7.129 c.55.1.5,c.55.1.5 130453,130454 1zbsA 291 7.465 c.55.1.5,c.55.1.5 124870,124871 3l0qA 554 7.496 3htvA 310 7.739 1sz2A 332 7.797 c.55.1.7 112169 1r59O 505 7.833 c.55.1.4,c.55.1.4 111697,111698 2hoeA 380 9.631 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3grsA 478 10.92 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1ebdA 455 12.30 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2bsaA 303 13.27 b.43.4.2,c.25.1.1 129078,129079 2gupA 292 13.55 c.55.1.10,c.55.1.10 135744,135745 3bp8A 406 14.85 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3mcpA 366 17.46 3epqA 302 19.25 1qh0A 295 19.31 b.43.4.2,c.25.1.1 68891,68892 1xc3A 302 21.01 c.55.1.10,c.55.1.10 115102,115103 1z6rA 406 21.87 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1zxoA 291 24.38 c.55.1.5,c.55.1.5 125784,125785 3dk9A 478 24.88 2aa4A 289 28.47 c.55.1.10,c.55.1.10 126465,126466 3fpkA 251 29.15 1qg0A 308 29.35 b.43.4.2,c.25.1.1 25639,31529 1mgqA 83 29.83 b.38.1.1 79099 3jvpA 572 31.73 1ig8A 486 32.57 c.55.1.3,c.55.1.3 64746,64747 1zc6A 305 33.63 c.55.1.5,c.55.1.5 124888,124889 2x58A 727 33.71 2pi1A 334 34.32 2yhxA 457 34.94 i.12.1.1 46024 2ap1A 327 34.95 c.55.1.10,c.55.1.10 127108,127109 3ce6A 494 35.16 1ogiA 303 35.64 b.43.4.2,c.25.1.1 92914,92915 3ii4A 466 39.89 2ok8A 316 40.32 1q1rA 431 42.31 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1fnc 314 44.34 1mioB 458 50.76 c.92.2.3 35602 2eq6A 464 54.16 3griA 424 56.20 3ba1A 333 56.22 2yquA 455 56.29 1lvlA 458 57.84 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 3icsA 588 58.80 2qdxA 257 60.85 3lm2A 226 61.65 1yqzA 438 62.39 1xwfA 431 63.85 c.2.1.4,c.23.12.3 122392,122393 1bx1A 314 65.23 b.43.4.2,c.25.1.1 25629,31519 2gqwA 408 66.96 2cduA 452 69.48 2q2rA 373 69.86 2r9zA 463 70.58 2pxxA 215 71.00 1xhcA 367 72.37 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1gvhA 396 74.26 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 3glqA 494 74.37 1d7yA 408 75.20 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2bgiA 272 77.57 3h4kA 598 78.13 1fl2A 310 80.12 c.3.1.5,c.3.1.5 59869,59870 1w34A 304 80.44 b.43.4.2,c.25.1.1 120620,120621 2eixA 243 81.96 3lb8A 436 87.11 3g1uA 437 87.95