# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2593 c.55.1.5 61278 1qh0A 295 0.4589 b.43.4.2,c.25.1.1 68891,68892 3ezwA 526 0.9658 3ga7A 326 1.319 2ch5A 347 1.708 c.55.1.5,c.55.1.5 130453,130454 1bu6O 501 1.856 c.55.1.4,c.55.1.4 33499,33500 3h3nO 506 1.927 1ogiA 303 1.995 b.43.4.2,c.25.1.1 92914,92915 3ll3A 504 2.321 1hkbA 917 2.338 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1a9xB 379 2.415 c.8.3.1,c.23.16.1 30732,31409 1zc6A 305 2.865 c.55.1.5,c.55.1.5 124888,124889 2w40A 503 2.973 2hoeA 380 3.248 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1b2rA 304 3.303 b.43.4.2,c.25.1.1 25648,31538 2bsaA 303 3.312 b.43.4.2,c.25.1.1 129078,129079 3gbtA 504 3.542 2ek8A 421 3.846 2gupA 292 4.100 c.55.1.10,c.55.1.10 135744,135745 2uytA 489 4.153 2qm1A 326 4.207 1sz2A 332 4.368 c.55.1.7 112169 2zf5O 497 4.517 1glcG 501 4.648 c.55.1.4,c.55.1.4 33519,33520 1qg0A 308 4.916 b.43.4.2,c.25.1.1 25639,31529 3htvA 310 5.156 2d4wA 504 5.582 2e2oA 299 5.829 1j5xA 342 7.622 c.80.1.1 71591 3h46O 506 7.792 1cqxA 403 9.017 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2cunA 410 9.873 2gtdA 251 11.49 c.55.1.13,c.55.1.13 135634,135635 3fpkA 251 12.18 1w34A 304 14.67 b.43.4.2,c.25.1.1 120620,120621 3gg4A 554 15.18 2ap1A 327 15.91 c.55.1.10,c.55.1.10 127108,127109 1mwmA 320 16.11 c.55.1.1,c.55.1.1 79580,79581 3bexA 249 16.44 c.55.1.13,c.55.1.13 155198,155199 1nd4A 264 17.68 d.144.1.6 91815 1ig8A 486 17.69 c.55.1.3,c.55.1.3 64746,64747 2as0A 396 17.78 b.122.1.9,c.66.1.51 127227,127228 3hz6A 511 17.88 1ji2A 585 19.56 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2itmA 484 21.01 2qmqA 286 21.72 3flcO 518 22.07 1glaG 501 22.46 c.55.1.4,c.55.1.4 33507,33508 3f4dA 332 22.83 1go2A 304 23.03 b.43.4.2,c.25.1.1 76243,76244 3gd3A 535 23.28 1nrwA 288 25.30 c.108.1.10 86128 3ii1A 535 26.24 1zxoA 291 28.54 c.55.1.5,c.55.1.5 125784,125785 3gu9A 331 29.13 2q7vA 325 31.50 2ok8A 316 32.19 2pa6A 427 33.60 2ivnA 330 34.12 2wsaA 438 34.33 2yhxA 457 34.94 i.12.1.1 46024 1mioA 534 35.46 c.92.2.3 35601 2wtbA 725 35.66 2q8nA 460 36.15 3i3yA 299 36.23 2g47A 990 36.26 3d7eO 505 36.36 2x58A 727 38.75 1j7nA 776 39.69 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2rc5A 314 40.43 2vqaA 361 42.26 3e1yA 451 42.29 3ez2A 398 42.40 2j63A 467 42.43 3mcpA 366 45.64 1attA 421 46.93 e.1.1.1 42638 3h6eA 482 46.94 3hi0A 508 47.28 1cqeA 580 48.22 a.93.1.2,g.3.11.1 18703,44246 3gnzP 213 48.76 3lhlA 287 49.06 1xc3A 302 49.88 c.55.1.10,c.55.1.10 115102,115103 1vdeA 454 51.11 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1gkfB 557 51.56 3a0oA 776 51.78 2yhx 457 51.78 1vheA 373 52.06 b.49.3.1,c.56.5.4 100669,100670 1zbsA 291 53.25 c.55.1.5,c.55.1.5 124870,124871 3l0qA 554 54.10 1icpA 376 54.78 c.1.4.1 62270 1bx1A 314 55.83 b.43.4.2,c.25.1.1 25629,31519 3dwbA 670 57.36 2w9xA 366 59.31 3ip1A 404 60.02 1ox6A 555 61.29 c.1.2.1,c.23.16.1 87505,87506 3clhA 343 62.16 2bmwA 304 64.92 b.43.4.2,c.25.1.1 128815,128816 1dgkN 917 64.97 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 3gu2A 336 65.45 3i5dA 356 66.82 1ep3B 262 68.33 b.43.4.2,c.25.1.3 25664,31554 1mioB 458 70.30 c.92.2.3 35602 2gruA 368 71.05 3lm2A 226 71.12 3h55A 400 72.88 3kljA 385 73.49 3gv0A 288 74.28 1bgvA 449 75.23 c.2.1.7,c.58.1.1 30217,33865 2hcyA 347 75.91 1jb9A 316 77.53 b.43.4.2,c.25.1.1 62840,62841 2cf5A 357 78.60 2o0bA 450 81.21 3ce6A 494 81.50 3griA 424 83.06 2w2gA 264 83.83 3dhyA 495 83.97 1gvhA 396 84.41 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1kolA 398 84.82 b.35.1.2,c.2.1.1 77474,77475 1f20A 435 84.98 b.43.4.1,c.25.1.4 64932,64933 1mwvA 714 85.78 a.93.1.3,a.93.1.3 85161,85162 3gbgA 276 85.88 1e5dA 402 86.36 c.23.5.1,d.157.1.3 31208,42061 1ujnA 348 86.58 e.22.1.1 99460 2xauA 773 86.69 3l0zA 350 86.74 1z6rA 406 89.49 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3ifrA 508 89.98