# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2582 c.55.1.5 61278 2uytA 489 0.5822 2zf5O 497 0.6670 3i8bA 515 0.7854 1bu6O 501 0.8751 c.55.1.4,c.55.1.4 33499,33500 3gbtA 504 1.329 3flcO 518 1.651 2itmA 484 1.725 2w40A 503 2.112 3h46O 506 2.464 3d7eO 505 2.520 2d4wA 504 2.839 3h3nO 506 2.863 3hz6A 511 2.908 3ifrA 508 3.235 3ezwA 526 3.377 3h6eA 482 3.921 3ll3A 504 4.148 2e2oA 299 4.652 1glcG 501 5.121 c.55.1.4,c.55.1.4 33519,33520 3gg4A 554 5.715 1glaG 501 5.828 c.55.1.4,c.55.1.4 33507,33508 3htvA 310 6.429 1sz2A 332 6.609 c.55.1.7 112169 2ch5A 347 7.238 c.55.1.5,c.55.1.5 130453,130454 2qm1A 326 7.556 1r59O 505 9.044 c.55.1.4,c.55.1.4 111697,111698 1ebdA 455 10.05 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 3l0qA 554 10.20 1zbsA 291 11.85 c.55.1.5,c.55.1.5 124870,124871 2hoeA 380 15.49 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2gupA 292 16.00 c.55.1.10,c.55.1.10 135744,135745 3grsA 478 16.02 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2bsaA 303 16.87 b.43.4.2,c.25.1.1 129078,129079 3bp8A 406 20.13 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1qh0A 295 20.22 b.43.4.2,c.25.1.1 68891,68892 3mcpA 366 21.96 3epqA 302 25.51 1xc3A 302 26.42 c.55.1.10,c.55.1.10 115102,115103 1ig8A 486 26.86 c.55.1.3,c.55.1.3 64746,64747 3dk9A 478 27.39 1z6rA 406 27.41 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2yhxA 457 30.68 i.12.1.1 46024 3jvpA 572 32.50 2aa4A 289 33.48 c.55.1.10,c.55.1.10 126465,126466 1mgqA 83 33.51 b.38.1.1 79099 1zxoA 291 33.57 c.55.1.5,c.55.1.5 125784,125785 1qg0A 308 34.13 b.43.4.2,c.25.1.1 25639,31529 2x58A 727 35.01 1q1rA 431 35.07 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3fpkA 251 35.29 2pi1A 334 36.56 2q2rA 373 36.72 3ii4A 466 37.52 1ogiA 303 40.21 b.43.4.2,c.25.1.1 92914,92915 1fl2A 310 41.67 c.3.1.5,c.3.1.5 59869,59870 1mioB 458 43.20 c.92.2.3 35602 3ce6A 494 44.76 2ok8A 316 45.27 3ba1A 333 46.28 2wtbA 725 48.19 1fnc 314 49.16 2ap1A 327 50.05 c.55.1.10,c.55.1.10 127108,127109 1lvlA 458 51.26 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 3icsA 588 51.78 2yquA 455 52.32 2eq6A 464 53.62 2gqwA 408 54.55 1trbA 320 57.37 c.3.1.5,c.3.1.5 30529,30530 1xhcA 367 59.29 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1bx1A 314 59.84 b.43.4.2,c.25.1.1 25629,31519 2cduA 452 61.02 3lb8A 436 63.94 1yqzA 438 65.00 1xwfA 431 67.95 c.2.1.4,c.23.12.3 122392,122393 3lm2A 226 68.16 2eixA 243 68.36 3kljA 385 68.67 2pxxA 215 70.25 1d7yA 408 71.01 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3ef6A 410 72.63 3ic9A 492 72.77 3do5A 327 73.51 1zc6A 305 75.52 c.55.1.5,c.55.1.5 124888,124889 1cqeA 580 76.09 a.93.1.2,g.3.11.1 18703,44246 1gvhA 396 76.63 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1nhpA 447 77.62 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2r9zA 463 78.12 3h4kA 598 79.64 3cnlA 262 79.78 3dghA 483 80.11 2bmwA 304 80.62 b.43.4.2,c.25.1.1 128815,128816 3ez2A 398 83.15 2hczX 245 87.23 3f8dA 323 87.38 3glqA 494 87.90 3k5iA 403 88.78