# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1huxA	270	0.1621	c.55.1.5	61278
1bu6O	501	2.266	c.55.1.4,c.55.1.4	33499,33500
3i8bA	515	2.456		
3flcO	518	3.013		
2uytA	489	3.050		
1zbsA	291	4.291	c.55.1.5,c.55.1.5	124870,124871
2ch5A	347	4.691	c.55.1.5,c.55.1.5	130453,130454
2w40A	503	4.813		
3mcpA	366	5.001		
1glcG	501	5.079	c.55.1.4,c.55.1.4	33519,33520
3hz6A	511	5.394		
2d4wA	504	6.185		
3htvA	310	6.686		
2e2oA	299	6.990		
1zxoA	291	7.815	c.55.1.5,c.55.1.5	125784,125785
3h46O	506	8.336		
2zf5O	497	9.058		
3h6eA	482	9.318		
2gupA	292	9.99	c.55.1.10,c.55.1.10	135744,135745
3ezwA	526	10.01		
3gbtA	504	10.03		
3ifrA	508	10.08		
2qm1A	326	10.10		
2bsaA	303	10.49	b.43.4.2,c.25.1.1	129078,129079
3d7eO	505	11.56		
3h3nO	506	11.64		
1qg0A	308	13.87	b.43.4.2,c.25.1.1	25639,31529
1qh0A	295	13.94	b.43.4.2,c.25.1.1	68891,68892
2hoeA	380	14.51	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
1xc3A	302	14.62	c.55.1.10,c.55.1.10	115102,115103
1zc6A	305	16.46	c.55.1.5,c.55.1.5	124888,124889
2ok8A	316	17.81		
2itmA	484	19.11		
1glaG	501	20.47	c.55.1.4,c.55.1.4	33507,33508
3ll3A	504	21.66		
1bx1A	314	23.23	b.43.4.2,c.25.1.1	25629,31519
1fnc	314	24.43		
1r59O	505	27.03	c.55.1.4,c.55.1.4	111697,111698
1cqeA	580	27.29	a.93.1.2,g.3.11.1	18703,44246
1sz2A	332	29.81	c.55.1.7	112169
3epqA	302	30.98		
1ogiA	303	31.62	b.43.4.2,c.25.1.1	92914,92915
1mgqA	83	33.04	b.38.1.1	79099
3bp8A	406	35.53	a.4.5.63,c.55.1.10,c.55.1.10	155463,155464,155465
3cnlA	262	36.79		
3fpkA	251	41.68		
3aapA	353	46.36		
3cj1A	456	52.40		
1mwmA	320	53.84	c.55.1.1,c.55.1.1	79580,79581
3griA	424	54.91		
1ig8A	486	59.01	c.55.1.3,c.55.1.3	64746,64747
1x82A	190	59.99	b.82.1.7	114955
1w34A	304	61.08	b.43.4.2,c.25.1.1	120620,120621
2x58A	727	64.39		
2aa4A	289	65.35	c.55.1.10,c.55.1.10	126465,126466
2ap1A	327	70.28	c.55.1.10,c.55.1.10	127108,127109
1ebdA	455	71.95	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
1b2rA	304	73.01	b.43.4.2,c.25.1.1	25648,31538
3bexA	249	76.08	c.55.1.13,c.55.1.13	155198,155199
1go2A	304	76.10	b.43.4.2,c.25.1.1	76243,76244
1fdr	248	76.82		
3ez2A	398	80.80		
2hczX	245	86.01		
3n58A	464	89.50