# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2603 c.55.1.5 61278 3gbtA 504 0.7909 3i8bA 515 0.9950 2uytA 489 1.211 2zf5O 497 1.239 1bu6O 501 1.603 c.55.1.4,c.55.1.4 33499,33500 3flcO 518 1.998 2itmA 484 2.544 2d4wA 504 2.961 2w40A 503 3.011 3ifrA 508 3.082 2e2oA 299 3.676 3ll3A 504 3.838 3h46O 506 3.874 3hz6A 511 4.067 2ch5A 347 4.099 c.55.1.5,c.55.1.5 130453,130454 1zc6A 305 4.237 c.55.1.5,c.55.1.5 124888,124889 3h3nO 506 4.359 3d7eO 505 4.644 3h6eA 482 4.857 3ezwA 526 5.060 1glcG 501 5.941 c.55.1.4,c.55.1.4 33519,33520 3htvA 310 7.608 1zbsA 291 8.510 c.55.1.5,c.55.1.5 124870,124871 1glaG 501 8.915 c.55.1.4,c.55.1.4 33507,33508 3gg4A 554 9.193 2qm1A 326 9.393 1zxoA 291 13.28 c.55.1.5,c.55.1.5 125784,125785 3mcpA 366 14.36 1r59O 505 14.49 c.55.1.4,c.55.1.4 111697,111698 1cqeA 580 16.99 a.93.1.2,g.3.11.1 18703,44246 2hoeA 380 19.58 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2gupA 292 20.08 c.55.1.10,c.55.1.10 135744,135745 3epqA 302 20.39 2x58A 727 22.34 1sz2A 332 24.78 c.55.1.7 112169 3grsA 478 25.04 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1mgqA 83 25.65 b.38.1.1 79099 3fpkA 251 34.73 1z6rA 406 35.20 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1ig8A 486 35.23 c.55.1.3,c.55.1.3 64746,64747 3dk9A 478 35.24 3n58A 464 36.86 2ok8A 316 38.38 3bp8A 406 38.92 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3ce6A 494 39.97 3glqA 494 40.00 3l0qA 554 43.40 3jvpA 572 45.83 3lm2A 226 47.08 3cj1A 456 47.53 3icsA 588 47.77 2ap1A 327 55.16 c.55.1.10,c.55.1.10 127108,127109 1q1rA 431 55.20 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1fdr 248 59.29 1xc3A 302 59.97 c.55.1.10,c.55.1.10 115102,115103 2q2rA 373 59.99 3g1uA 437 60.59 2yhxA 457 62.51 i.12.1.1 46024 1trbA 320 63.04 c.3.1.5,c.3.1.5 30529,30530 1x82A 190 64.47 b.82.1.7 114955 1ebdA 455 65.26 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2pi1A 334 68.55 1fl2A 310 69.82 c.3.1.5,c.3.1.5 59869,59870 1mioB 458 71.17 c.92.2.3 35602 2bgiA 272 71.34 2pxxA 215 71.58 1zwyA 185 72.44 c.51.4.3 125753 1qhaA 917 73.83 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 3dhyA 495 74.52 2gqwA 408 77.17 1d7yA 408 77.43 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3aapA 353 77.54 1xhcA 367 77.67 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2aa4A 289 81.20 c.55.1.10,c.55.1.10 126465,126466 1ljoA 77 81.72 b.38.1.1 73941 1mwmA 320 82.02 c.55.1.1,c.55.1.1 79580,79581 2eixA 243 84.81 3lb8A 436 86.43 2i7nA 360 86.45 c.55.1.14,c.55.1.14 147547,147548 2bmwA 304 86.77 b.43.4.2,c.25.1.1 128815,128816 2qdxA 257 88.32 2bsaA 303 88.42 b.43.4.2,c.25.1.1 129078,129079