# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.2575 c.55.1.5 61278 2uytA 489 1.002 2zf5O 497 1.274 3gbtA 504 1.948 3i8bA 515 1.998 1bu6O 501 2.148 c.55.1.4,c.55.1.4 33499,33500 3ifrA 508 3.208 3flcO 518 3.502 3ll3A 504 3.860 2itmA 484 3.921 3hz6A 511 4.016 1zbsA 291 4.314 c.55.1.5,c.55.1.5 124870,124871 2w40A 503 4.468 1zc6A 305 4.735 c.55.1.5,c.55.1.5 124888,124889 2ch5A 347 4.918 c.55.1.5,c.55.1.5 130453,130454 3h6eA 482 5.646 2d4wA 504 6.320 3h46O 506 6.411 2e2oA 299 6.918 3h3nO 506 8.163 3d7eO 505 8.409 1glcG 501 9.322 c.55.1.4,c.55.1.4 33519,33520 1r59O 505 10.20 c.55.1.4,c.55.1.4 111697,111698 3ezwA 526 10.28 3htvA 310 10.98 1zxoA 291 11.93 c.55.1.5,c.55.1.5 125784,125785 3mcpA 366 12.05 2bsaA 303 12.81 b.43.4.2,c.25.1.1 129078,129079 2qm1A 326 12.99 1glaG 501 14.88 c.55.1.4,c.55.1.4 33507,33508 3gg4A 554 15.17 2ok8A 316 15.98 1mgqA 83 17.83 b.38.1.1 79099 1sz2A 332 19.32 c.55.1.7 112169 2gupA 292 22.21 c.55.1.10,c.55.1.10 135744,135745 3epqA 302 22.53 1qg0A 308 26.49 b.43.4.2,c.25.1.1 25639,31529 2hoeA 380 28.44 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1ebdA 455 31.90 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1qh0A 295 33.30 b.43.4.2,c.25.1.1 68891,68892 3fpkA 251 33.33 1fnc 314 35.70 1ogiA 303 37.48 b.43.4.2,c.25.1.1 92914,92915 1bx1A 314 38.77 b.43.4.2,c.25.1.1 25629,31519 1cqeA 580 41.53 a.93.1.2,g.3.11.1 18703,44246 2x58A 727 43.68 1q1rA 431 48.37 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1x82A 190 50.15 b.82.1.7 114955 3grsA 478 50.16 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 3n58A 464 50.91 1mioB 458 51.71 c.92.2.3 35602 2aa4A 289 52.39 c.55.1.10,c.55.1.10 126465,126466 1z6rA 406 52.58 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3lm2A 226 53.64 3ce6A 494 55.41 3bp8A 406 57.26 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1xhcA 367 57.44 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1ljoA 77 58.10 b.38.1.1 73941 3glqA 494 60.26 3l0qA 554 61.09 2pi1A 334 62.13 1xc3A 302 63.36 c.55.1.10,c.55.1.10 115102,115103 2pxxA 215 63.84 1gpjA 404 66.70 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1ig8A 486 67.06 c.55.1.3,c.55.1.3 64746,64747 3ii4A 466 71.94 2gqwA 408 75.08 3do5A 327 77.86 2q2rA 373 78.10 3dhyA 495 78.82 3icsA 588 79.28 3jvpA 572 81.29 2ap1A 327 82.08 c.55.1.10,c.55.1.10 127108,127109 1fdr 248 82.96 2yhxA 457 86.51 i.12.1.1 46024 1d7yA 408 87.41 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204