# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.08144 c.55.1.5 61278 2e2oA 299 0.8984 1zbsA 291 1.344 c.55.1.5,c.55.1.5 124870,124871 1zc6A 305 1.420 c.55.1.5,c.55.1.5 124888,124889 2ch5A 347 1.646 c.55.1.5,c.55.1.5 130453,130454 3gbtA 504 2.268 3ll3A 504 2.722 1r59O 505 2.764 c.55.1.4,c.55.1.4 111697,111698 2itmA 484 3.060 3h6eA 482 3.209 1bu6O 501 3.887 c.55.1.4,c.55.1.4 33499,33500 3bexA 249 3.896 c.55.1.13,c.55.1.13 155198,155199 2zf5O 497 4.343 3ifrA 508 4.649 2d4wA 504 4.785 2w40A 503 4.873 2uytA 489 5.173 3i8bA 515 5.328 2gtdA 251 5.634 c.55.1.13,c.55.1.13 135634,135635 1sz2A 332 5.878 c.55.1.7 112169 2bsaA 303 8.628 b.43.4.2,c.25.1.1 129078,129079 2gqwA 408 9.540 1glaG 501 9.790 c.55.1.4,c.55.1.4 33507,33508 3flcO 518 11.16 1okjA 251 12.66 c.55.1.9,c.55.1.9 103998,103999 1glcG 501 12.94 c.55.1.4,c.55.1.4 33519,33520 2h3gX 268 13.48 1e4fT 419 14.03 c.55.1.1,c.55.1.1 33453,33454 3gg4A 554 15.02 1d7yA 408 15.24 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3hz6A 511 15.24 3h46O 506 16.16 3ezwA 526 16.51 3h3nO 506 17.12 1v4sA 455 17.67 c.55.1.3,c.55.1.3 100309,100310 2yhxA 457 20.82 i.12.1.1 46024 2a6aA 218 22.62 c.55.1.9,c.55.1.9 126231,126232 1w34A 304 24.47 b.43.4.2,c.25.1.1 120620,120621 3cj1A 456 24.51 3kljA 385 24.90 1qhaA 917 25.30 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 2yhx 457 29.64 2o2cA 613 30.32 3htvA 310 31.26 2v3aA 384 32.16 2gelA 231 32.92 3d7eO 505 33.50 1zxoA 291 34.29 c.55.1.5,c.55.1.5 125784,125785 3lb8A 436 35.68 3jvpA 572 35.75 3iwaA 472 36.03 3f9mA 470 37.12 3cqyA 370 38.35 3ef6A 410 39.17 1xc3A 302 41.56 c.55.1.10,c.55.1.10 115102,115103 1z6rA 406 42.99 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1ig8A 486 43.02 c.55.1.3,c.55.1.3 64746,64747 3lm2A 226 47.24 3ljkA 543 47.53 1t6cA 315 48.04 c.55.1.8,c.55.1.8 106558,106559 2aa4A 289 48.98 c.55.1.10,c.55.1.10 126465,126466 1yqzA 438 49.00 1ogiA 303 50.41 b.43.4.2,c.25.1.1 92914,92915 1xhcA 367 52.05 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1qg0A 308 54.06 b.43.4.2,c.25.1.1 25639,31529 3icsA 588 55.37 1u6zA 513 55.80 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3mdqA 315 56.59 1qh0A 295 56.71 b.43.4.2,c.25.1.1 68891,68892 1czaN 917 57.57 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2cxnA 557 58.84 1b0zA 445 61.25 c.80.1.2 35309 2eq6A 464 62.01 2wnwA 447 69.39 2zgyA 320 71.20 c.55.1.1,c.55.1.1 154425,154426 3grsA 478 71.45 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 3mcpA 366 72.12 3d3aA 612 72.97 2pgi 445 77.33 1dgkN 917 78.33 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 1sazA 381 78.47 c.55.1.2,c.55.1.2 118925,118926 3hjbA 574 81.40 2b5oA 402 82.32 2cduA 452 83.15 1bx1A 314 83.81 b.43.4.2,c.25.1.1 25629,31519 2bmwA 304 85.76 b.43.4.2,c.25.1.1 128815,128816 2q2rA 373 86.26 3gd3A 535 87.64 2qm1A 326 87.93