# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.01733 c.55.1.5 61278 2zf5O 497 0.5370 3flcO 518 0.5616 1bu6O 501 0.5855 c.55.1.4,c.55.1.4 33499,33500 2ch5A 347 0.6403 c.55.1.5,c.55.1.5 130453,130454 3i8bA 515 0.7409 1r59O 505 0.8636 c.55.1.4,c.55.1.4 111697,111698 2w40A 503 1.228 3htvA 310 1.283 3gbtA 504 1.287 2itmA 484 1.383 2bsaA 303 1.453 b.43.4.2,c.25.1.1 129078,129079 2d4wA 504 1.458 1glcG 501 1.731 c.55.1.4,c.55.1.4 33519,33520 3ezwA 526 1.845 3h6eA 482 1.854 3h46O 506 1.906 1glaG 501 1.931 c.55.1.4,c.55.1.4 33507,33508 1zc6A 305 1.963 c.55.1.5,c.55.1.5 124888,124889 1sz2A 332 2.063 c.55.1.7 112169 3hz6A 511 2.233 3ifrA 508 2.428 2hoeA 380 2.633 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3bexA 249 2.645 c.55.1.13,c.55.1.13 155198,155199 1qg0A 308 3.317 b.43.4.2,c.25.1.1 25639,31529 2uytA 489 3.547 1zbsA 291 3.763 c.55.1.5,c.55.1.5 124870,124871 1xc3A 302 3.846 c.55.1.10,c.55.1.10 115102,115103 3ll3A 504 4.023 2e2oA 299 4.233 3h3nO 506 4.311 1w34A 304 5.018 b.43.4.2,c.25.1.1 120620,120621 3d7eO 505 5.066 2gtdA 251 5.122 c.55.1.13,c.55.1.13 135634,135635 3gg4A 554 5.225 1ogiA 303 7.376 b.43.4.2,c.25.1.1 92914,92915 2qm1A 326 7.501 1fnc 314 7.711 1woqA 267 7.956 c.55.1.10,c.55.1.10 109462,109463 3jvpA 572 9.113 1qh0A 295 9.360 b.43.4.2,c.25.1.1 68891,68892 1bx1A 314 9.714 b.43.4.2,c.25.1.1 25629,31519 3bp8A 406 9.753 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1okjA 251 11.65 c.55.1.9,c.55.1.9 103998,103999 1go2A 304 12.03 b.43.4.2,c.25.1.1 76243,76244 2b5oA 402 12.53 3l0qA 554 13.13 1z6rA 406 13.93 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2a6aA 218 14.50 c.55.1.9,c.55.1.9 126231,126232 1b2rA 304 14.72 b.43.4.2,c.25.1.1 25648,31538 2gelA 231 14.93 3grsA 478 15.02 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2h3gX 268 15.36 2ok8A 316 16.73 3epqA 302 17.11 2ivnA 330 18.64 2aa4A 289 18.78 c.55.1.10,c.55.1.10 126465,126466 3mcpA 366 19.96 3lm2A 226 21.50 1fndA 314 23.19 b.43.4.2,c.25.1.1 25626,31516 2gupA 292 23.80 c.55.1.10,c.55.1.10 135744,135745 3mdqA 315 29.43 3cj1A 456 29.48 2bmwA 304 30.68 b.43.4.2,c.25.1.1 128815,128816 2ap1A 327 31.15 c.55.1.10,c.55.1.10 127108,127109 1v4sA 455 34.57 c.55.1.3,c.55.1.3 100309,100310 2wnwA 447 41.11 2q2rA 373 41.30 3f9mA 470 41.71 3ljkA 543 43.10 1ig8A 486 44.46 c.55.1.3,c.55.1.3 64746,64747 1dgkN 917 45.80 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 1t6cA 315 45.93 c.55.1.8,c.55.1.8 106558,106559 1u6zA 513 46.46 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3aapA 353 48.93 1qhaA 917 49.86 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 2o2cA 613 51.10 1lhpA 312 51.61 c.72.1.5 77960 2pgi 445 51.76 2jfkA 433 55.18 2gqwA 408 56.31 1ep3B 262 57.21 b.43.4.2,c.25.1.3 25664,31554 2eixA 243 58.17 1czaN 917 59.03 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 3icsA 588 61.95 1mwmA 320 69.02 c.55.1.1,c.55.1.1 79580,79581 1zxoA 291 70.55 c.55.1.5,c.55.1.5 125784,125785 3hjbA 574 75.05 1dqrA 557 77.54 c.80.1.2 35305 1d7yA 408 80.83 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3lo8A 311 82.37