# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e2oA 299 0.2977 1zbsA 291 0.4354 c.55.1.5,c.55.1.5 124870,124871 2gupA 292 1.196 c.55.1.10,c.55.1.10 135744,135745 1huxA 270 1.237 c.55.1.5 61278 2ivnA 330 1.631 2aa4A 289 1.639 c.55.1.10,c.55.1.10 126465,126466 1zc6A 305 1.727 c.55.1.5,c.55.1.5 124888,124889 2qm1A 326 1.789 1sz2A 332 2.298 c.55.1.7 112169 2hoeA 380 2.460 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3gbtA 504 2.702 3bp8A 406 2.923 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2ch5A 347 2.958 c.55.1.5,c.55.1.5 130453,130454 3htvA 310 3.105 2h3gX 268 3.167 1v4sA 455 3.346 c.55.1.3,c.55.1.3 100309,100310 1z6rA 406 4.552 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2ap1A 327 5.132 c.55.1.10,c.55.1.10 127108,127109 3f9mA 470 5.350 3ll3A 504 5.737 1woqA 267 5.749 c.55.1.10,c.55.1.10 109462,109463 1xc3A 302 5.888 c.55.1.10,c.55.1.10 115102,115103 3h1qA 272 6.522 3i8bA 515 7.394 2f9wA 271 7.642 c.55.1.13,c.55.1.13 133174,133175 1u6zA 513 7.692 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3bexA 249 7.734 c.55.1.13,c.55.1.13 155198,155199 1e4fT 419 8.203 c.55.1.1,c.55.1.1 33453,33454 1ig8A 486 8.490 c.55.1.3,c.55.1.3 64746,64747 3hz6A 511 8.786 3epqA 302 9.217 1sazA 381 11.76 c.55.1.2,c.55.1.2 118925,118926 1bu6O 501 12.08 c.55.1.4,c.55.1.4 33499,33500 1jcfA 344 12.40 c.55.1.1,c.55.1.1 62878,62879 1t6cA 315 12.97 c.55.1.8,c.55.1.8 106558,106559 3h46O 506 12.97 2gtdA 251 13.28 c.55.1.13,c.55.1.13 135634,135635 2ewsA 287 13.29 c.55.1.14 146991 3lm2A 226 13.30 2yhx 457 13.55 1x3mA 415 14.57 c.55.1.2,c.55.1.2 121664,121665 3d7eO 505 15.48 3h3nO 506 15.52 3flcO 518 16.48 1qhaA 917 16.51 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33467,33468,33469,33470 2zf5O 497 16.77 3mcpA 366 17.13 1mwmA 320 17.17 c.55.1.1,c.55.1.1 79580,79581 1glcG 501 18.15 c.55.1.4,c.55.1.4 33519,33520 1wuaA 375 18.16 c.55.1.1,c.55.1.1 121281,121282 3khyA 384 18.41 1ba1 386 18.47 2e1zA 415 19.34 c.55.1.2,c.55.1.2 146631,146632 3aapA 353 20.23 3d2fA 675 20.95 2w40A 503 21.29 2yhxA 457 21.34 i.12.1.1 46024 2w49D 372 21.39 1atnA 373 22.61 c.55.1.1,c.55.1.1 33437,33438 1d4xA 375 22.63 c.55.1.1,c.55.1.1 59107,59108 1yagA 375 22.81 c.55.1.1,c.55.1.1 33449,33450 3c0bA 334 23.36 3cipA 375 23.78 2fxuA 375 23.93 c.55.1.1,c.55.1.1 134340,134341 3hi0A 508 24.93 3cerA 343 25.30 3cqyA 370 26.01 1czaN 917 27.32 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2q2rA 373 27.33 2itmA 484 27.75 3gg4A 554 29.08 1zxoA 291 29.13 c.55.1.5,c.55.1.5 125784,125785 3l0qA 554 30.70 2uytA 489 30.99 1g99A 408 32.30 c.55.1.2,c.55.1.2 33457,33458 1yuwA 554 33.26 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1qz5A 375 33.75 c.55.1.1,c.55.1.1 96614,96615 2btfA 375 35.38 c.55.1.1,c.55.1.1 33429,33430 3ezwA 526 35.73 2qxlA 658 35.76 3hrgA 257 36.52 1bupA 386 37.62 c.55.1.1,c.55.1.1 33377,33378 3ifrA 508 40.67 1hkbA 917 41.70 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 2d0oA 610 42.05 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 3fzhA 381 42.41 1dgkN 917 42.67 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 3a8yA 392 44.89 1nbwA 607 46.12 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1kay 381 47.44 3mdqA 315 48.90 1glaG 501 51.73 c.55.1.4,c.55.1.4 33507,33508 1k8kA 418 51.83 c.55.1.1,c.55.1.1 68305,68306 2d4wA 504 52.15 3jvpA 572 56.57 2zgyA 320 62.94 c.55.1.1,c.55.1.1 154425,154426 2gelA 231 64.80 1okjA 251 69.77 c.55.1.9,c.55.1.9 103998,103999 3js6A 355 70.69 3i33A 404 80.60 2e7jA 371 87.38 c.67.1.9 146704