# List of top-scoring protein chains for T0628.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b8aX	485	2.563		
3h6eA	482	9.818		
2gtdA	251	12.75	c.55.1.13,c.55.1.13	135634,135635
1ig8A	486	12.97	c.55.1.3,c.55.1.3	64746,64747
2wsc1	241	16.10		
3eo3A	333	17.80		
3bexA	249	18.54	c.55.1.13,c.55.1.13	155198,155199
1zbsA	291	22.23	c.55.1.5,c.55.1.5	124870,124871
1zxoA	291	23.25	c.55.1.5,c.55.1.5	125784,125785
1m113	238	25.27		
1zc6A	305	42.29	c.55.1.5,c.55.1.5	124888,124889
2gmhA	584	42.35	c.3.1.2,d.16.1.8,d.58.1.6	135375,135376,135377
2z1eA	338	43.76	d.79.4.1,d.139.1.1	153932,153933
1vqqA	646	45.78	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1mwsA	646	46.41	d.17.4.5,d.175.1.1,e.3.1.1	79592,79593,79594
2o011	187	52.22		
3g25A	501	55.62		
3gafA	256	62.28		
2phcB	225	63.73	b.62.1.4,d.74.5.1	149466,149467
2asuB	234	68.00		
2j4rA	308	70.60	c.55.1.8,c.55.1.8	147882,147883
1t6cA	315	71.95	c.55.1.8,c.55.1.8	106558,106559
3l0qA	554	72.56		
3khkA	544	73.90		
1t6dA	315	81.11	c.55.1.8,c.55.1.8	106560,106561
1rt8A	513	81.50	a.40.1.1	105095
3gjyA	317	83.45		
1sz2A	332	85.41	c.55.1.7	112169