# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3htvA 310 0.02017 2gupA 292 0.02713 c.55.1.10,c.55.1.10 135744,135745 2aa4A 289 0.05188 c.55.1.10,c.55.1.10 126465,126466 1huxA 270 0.07966 c.55.1.5 61278 2gtdA 251 0.09417 c.55.1.13,c.55.1.13 135634,135635 1zc6A 305 0.1060 c.55.1.5,c.55.1.5 124888,124889 2ap1A 327 0.1137 c.55.1.10,c.55.1.10 127108,127109 1sz2A 332 0.1328 c.55.1.7 112169 2e2oA 299 0.1667 1zbsA 291 0.1903 c.55.1.5,c.55.1.5 124870,124871 2h3gX 268 0.3564 2hoeA 380 0.3756 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2qm1A 326 0.4007 2f9wA 271 0.4765 c.55.1.13,c.55.1.13 133174,133175 1xc3A 302 0.6455 c.55.1.10,c.55.1.10 115102,115103 3i8bA 515 0.7217 2ch5A 347 0.7692 c.55.1.5,c.55.1.5 130453,130454 3h46O 506 0.8001 3lm2A 226 0.9057 3epqA 302 0.9410 3hi0A 508 1.188 3hz6A 511 1.261 3ll3A 504 1.293 1z6rA 406 1.518 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1woqA 267 1.554 c.55.1.10,c.55.1.10 109462,109463 3mcpA 366 1.600 3bexA 249 1.668 c.55.1.13,c.55.1.13 155198,155199 3h3nO 506 1.671 3gbtA 504 2.210 3h6eA 482 2.642 1bu6O 501 2.656 c.55.1.4,c.55.1.4 33499,33500 3ezwA 526 2.923 3d7eO 505 2.994 3flcO 518 3.261 3l0qA 554 3.292 1t6cA 315 3.371 c.55.1.8,c.55.1.8 106558,106559 1qh8B 519 3.548 c.92.2.3 35634 2ewsA 287 3.606 c.55.1.14 146991 2w40A 503 3.986 2d4wA 504 4.264 3gg4A 554 4.413 2zf5O 497 4.878 1r59O 505 5.174 c.55.1.4,c.55.1.4 111697,111698 3bp8A 406 5.362 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1m1nB 522 7.085 c.92.2.3 78418 2ivnA 330 8.786 1v4sA 455 10.62 c.55.1.3,c.55.1.3 100309,100310 1u6zA 513 10.79 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3jvpA 572 11.89 1ig8A 486 13.57 c.55.1.3,c.55.1.3 64746,64747 3ifrA 508 14.98 1qh8A 478 16.63 c.92.2.3 35633 2q2rA 373 17.41 3c0bA 334 18.16 3cetA 334 18.97 1k47A 337 19.71 d.14.1.5,d.58.26.4 72040,72041 2itmA 484 21.60 1czaN 917 24.03 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2d0iA 333 24.51 3k1aA 491 24.67 3mdqA 315 25.33 2uytA 489 26.54 3h1qA 272 26.79 2wtbA 725 28.34 2pi1A 334 28.44 3lrxA 158 29.80 3aapA 353 30.60 2xdqA 460 31.40 2x58A 727 31.80 1q1rA 431 33.80 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2we8A 386 34.52 2nshA 169 37.46 3ejwA 315 39.02 2p6pA 384 41.94 3f9mA 470 47.92 3cqyA 370 48.13 2v3aA 384 48.90 3fz9A 112 52.01 1dxyA 333 53.63 c.2.1.4,c.23.12.1 30094,31354 3ie7A 320 53.79 2cduA 452 54.63 3kljA 385 54.72 3iwaA 472 54.80 2bgiA 272 55.76 2dbqA 334 55.86 3kb6A 334 56.22 1o4vA 183 56.84 c.23.8.1 86628 1j5sA 463 58.21 c.1.9.8 71580 3lb8A 436 60.06 2ntoA 201 60.19 1nhsA 447 61.40 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2qfpA 424 64.43 b.1.12.1,d.159.1.1 150742,150743 2r6hA 290 69.14 3ef6A 410 69.81 3guxA 314 70.50 3h8qA 114 75.29 3k5iA 403 77.86 2eixA 243 78.52 3aekA 437 80.06 3bp8C 75 85.99 d.95.1.1 155469 2fsjA 346 87.64 c.55.1.12,c.55.1.12 134025,134026 2o4cA 380 89.17