# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3htvA 310 0.01553 2aa4A 289 0.01668 c.55.1.10,c.55.1.10 126465,126466 1huxA 270 0.01984 c.55.1.5 61278 2gupA 292 0.02305 c.55.1.10,c.55.1.10 135744,135745 1zc6A 305 0.03516 c.55.1.5,c.55.1.5 124888,124889 2ap1A 327 0.04870 c.55.1.10,c.55.1.10 127108,127109 2gtdA 251 0.06114 c.55.1.13,c.55.1.13 135634,135635 1zbsA 291 0.06917 c.55.1.5,c.55.1.5 124870,124871 1sz2A 332 0.06986 c.55.1.7 112169 2e2oA 299 0.09084 2qm1A 326 0.1749 2h3gX 268 0.2431 3h46O 506 0.2521 3i8bA 515 0.2766 3lm2A 226 0.2882 2f9wA 271 0.3233 c.55.1.13,c.55.1.13 133174,133175 1xc3A 302 0.4716 c.55.1.10,c.55.1.10 115102,115103 2hoeA 380 0.4739 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1z6rA 406 0.4858 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3hz6A 511 0.4936 3h3nO 506 0.5404 3mcpA 366 0.7905 3epqA 302 0.8305 1t6cA 315 0.8394 c.55.1.8,c.55.1.8 106558,106559 2ch5A 347 0.9066 c.55.1.5,c.55.1.5 130453,130454 3ll3A 504 0.9236 3flcO 518 1.035 1bu6O 501 1.036 c.55.1.4,c.55.1.4 33499,33500 3hi0A 508 1.053 3ezwA 526 1.055 1woqA 267 1.067 c.55.1.10,c.55.1.10 109462,109463 3d7eO 505 1.076 3h6eA 482 1.093 3gbtA 504 1.136 2d4wA 504 1.281 2w40A 503 1.358 3bexA 249 1.530 c.55.1.13,c.55.1.13 155198,155199 3l0qA 554 1.833 3gg4A 554 2.052 1qh8B 519 2.079 c.92.2.3 35634 1u6zA 513 2.164 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3ifrA 508 3.476 3jvpA 572 3.491 1qh8A 478 3.561 c.92.2.3 35633 2ewsA 287 3.843 c.55.1.14 146991 3bp8A 406 3.936 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3mdqA 315 4.468 3aapA 353 5.736 3k1aA 491 6.022 1v4sA 455 6.127 c.55.1.3,c.55.1.3 100309,100310 2q2rA 373 6.173 1m1nB 522 8.231 c.92.2.3 78418 1ig8A 486 8.274 c.55.1.3,c.55.1.3 64746,64747 2zf5O 497 8.992 2itmA 484 9.375 3cetA 334 10.78 2d0iA 333 11.43 2ivnA 330 12.82 3h1qA 272 14.25 3aekA 437 14.30 2xdqA 460 15.51 3c0bA 334 15.69 1k47A 337 16.03 d.14.1.5,d.58.26.4 72040,72041 1czaN 917 18.65 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1q1rA 431 20.47 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2x58A 727 24.70 1m1nA 491 26.43 c.92.2.3 78417 1dxyA 333 27.21 c.2.1.4,c.23.12.1 30094,31354 1r59O 505 27.54 c.55.1.4,c.55.1.4 111697,111698 2wtbA 725 29.51 2dbqA 334 32.66 2yhxA 457 34.64 i.12.1.1 46024 3cerA 343 39.68 2pi1A 334 40.08 2we8A 386 40.48 2p6pA 384 40.78 3f9mA 470 42.61 2bgiA 272 43.10 3k5iA 403 43.42 1knqA 175 43.77 c.37.1.17 72786 2uytA 489 44.31 2dwcA 433 45.13 2yhx 457 46.03 3lrxA 158 46.59 2nshA 169 47.17 3guxA 314 49.11 1d2vC 466 52.40 3lb8A 436 54.82 1fdrA 248 56.30 b.43.4.2,c.25.1.1 25653,31543 2v3aA 384 56.56 2i7nA 360 58.15 c.55.1.14,c.55.1.14 147547,147548 3fz9A 112 59.54 2cduA 452 63.81 1a8pA 258 66.17 b.43.4.2,c.25.1.1 25654,31544 1nhsA 447 66.78 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1o4vA 183 69.30 c.23.8.1 86628 3ie7A 320 70.04 2qfpA 424 72.45 b.1.12.1,d.159.1.1 150742,150743 2wulA 118 74.71 3floA 460 77.65 3f8dA 323 79.86 1ygyA 529 82.48 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2fsjA 346 82.53 c.55.1.12,c.55.1.12 134025,134026 3cqyA 370 83.24 3bp3A 82 84.88 2gqwA 408 85.63 3ktnA 346 86.29 1e4fT 419 86.68 c.55.1.1,c.55.1.1 33453,33454 1kjqA 391 86.78 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2qgnA 322 86.98 3gg9A 352 87.93 1j5sA 463 88.35 c.1.9.8 71580 3ef6A 410 89.41