# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gupA 292 0.1790 c.55.1.10,c.55.1.10 135744,135745 3htvA 310 0.1982 2e2oA 299 0.1998 2ap1A 327 0.2462 c.55.1.10,c.55.1.10 127108,127109 2gtdA 251 0.2917 c.55.1.13,c.55.1.13 135634,135635 1zbsA 291 0.3655 c.55.1.5,c.55.1.5 124870,124871 1sz2A 332 0.3807 c.55.1.7 112169 2aa4A 289 0.5157 c.55.1.10,c.55.1.10 126465,126466 1huxA 270 0.7794 c.55.1.5 61278 2qm1A 326 0.9321 2ch5A 347 1.356 c.55.1.5,c.55.1.5 130453,130454 2f9wA 271 1.381 c.55.1.13,c.55.1.13 133174,133175 3mcpA 366 1.694 1zc6A 305 2.136 c.55.1.5,c.55.1.5 124888,124889 1z6rA 406 2.875 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3lm2A 226 3.006 2hoeA 380 3.468 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3h46O 506 3.700 1xc3A 302 4.239 c.55.1.10,c.55.1.10 115102,115103 1qh8B 519 4.486 c.92.2.3 35634 3hz6A 511 4.487 3epqA 302 5.309 3ll3A 504 5.391 3h6eA 482 5.427 2h3gX 268 5.436 3l0qA 554 5.584 1bu6O 501 5.720 c.55.1.4,c.55.1.4 33499,33500 3hi0A 508 6.104 3i8bA 515 6.317 2ewsA 287 6.373 c.55.1.14 146991 1u6zA 513 6.900 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3bp8A 406 7.202 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1t6cA 315 7.733 c.55.1.8,c.55.1.8 106558,106559 1woqA 267 7.737 c.55.1.10,c.55.1.10 109462,109463 3gbtA 504 7.809 3h3nO 506 7.812 3flcO 518 7.825 3gg4A 554 7.990 3ezwA 526 8.314 2w40A 503 8.549 2zf5O 497 8.924 3d7eO 505 9.681 2d4wA 504 10.16 3aekA 437 10.87 1r59O 505 11.05 c.55.1.4,c.55.1.4 111697,111698 3bexA 249 11.57 c.55.1.13,c.55.1.13 155198,155199 1dxyA 333 12.96 c.2.1.4,c.23.12.1 30094,31354 2ivnA 330 13.89 2v3aA 384 14.05 1q1rA 431 14.09 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1m1nB 522 14.43 c.92.2.3 78418 2pi1A 334 16.04 1k47A 337 16.43 d.14.1.5,d.58.26.4 72040,72041 3k1aA 491 18.35 3kb6A 334 18.35 1qh8A 478 20.59 c.92.2.3 35633 2itmA 484 24.87 1topA 162 24.92 a.39.1.5 17223 2d0iA 333 25.15 2xdqA 460 25.69 2xatA 212 29.12 b.81.1.3 28058 3kljA 385 30.17 1v4sA 455 31.55 c.55.1.3,c.55.1.3 100309,100310 3jvpA 572 31.76 1d5tA 433 32.33 c.3.1.3,d.16.1.6 30422,37986 3ifrA 508 32.60 3lrxA 158 34.85 2eq6A 464 35.31 2ei9A 240 36.65 2dsnA 387 38.20 3mdqA 315 38.47 2dbqA 334 41.08 3lb8A 436 41.26 2wtbA 725 42.13 2p6pA 384 42.57 2q2rA 373 43.37 3cetA 334 45.45 2gqwA 408 46.43 3dfuA 232 50.92 3ef6A 410 52.95 3fg2P 404 55.50 2x58A 727 55.74 3l4bC 218 56.06 2eixA 243 56.49 2j4jA 226 60.76 3ba1A 333 61.93 1yqzA 438 62.88 2g1uA 155 64.26 3e4rA 324 64.28 2cduA 452 64.30 2bgiA 272 64.37 3iwaA 472 64.53 3k5iA 403 65.00 3h1qA 272 65.35 1ig8A 486 65.60 c.55.1.3,c.55.1.3 64746,64747 3gg9A 352 67.24 3fvvA 232 67.53 3hsqA 259 67.69 2uytA 489 69.01 1krhA 338 71.18 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3fz9A 112 72.90 2j6iA 364 76.87 2rinA 298 81.97 2iyfA 430 88.34