# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gupA	292	0.08502	c.55.1.10,c.55.1.10	135744,135745
1huxA	270	0.09009	c.55.1.5	61278
2aa4A	289	0.1238	c.55.1.10,c.55.1.10	126465,126466
2e2oA	299	0.1709		
2ap1A	327	0.2900	c.55.1.10,c.55.1.10	127108,127109
3htvA	310	0.4785		
1sz2A	332	0.5605	c.55.1.7	112169
3i8bA	515	0.5988		
1zc6A	305	0.6663	c.55.1.5,c.55.1.5	124888,124889
3hz6A	511	0.6964		
3h46O	506	0.7373		
2qm1A	326	1.133		
3lm2A	226	1.201		
2gtdA	251	1.249	c.55.1.13,c.55.1.13	135634,135635
3mcpA	366	1.293		
1zbsA	291	1.414	c.55.1.5,c.55.1.5	124870,124871
3ll3A	504	1.440		
1xc3A	302	1.793	c.55.1.10,c.55.1.10	115102,115103
3gbtA	504	2.120		
3hi0A	508	2.280		
3h3nO	506	2.280		
1woqA	267	2.357	c.55.1.10,c.55.1.10	109462,109463
2zf5O	497	2.885		
3h6eA	482	4.110		
1k47A	337	4.284	d.14.1.5,d.58.26.4	72040,72041
2d4wA	504	4.320		
2f9wA	271	4.398	c.55.1.13,c.55.1.13	133174,133175
3flcO	518	4.645		
1z6rA	406	4.910	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
2ewsA	287	6.352	c.55.1.14	146991
2w40A	503	6.536		
1bu6O	501	6.947	c.55.1.4,c.55.1.4	33499,33500
3ezwA	526	7.009		
1m1nB	522	8.394	c.92.2.3	78418
1qh8B	519	8.501	c.92.2.3	35634
2hoeA	380	8.745	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
1r59O	505	9.129	c.55.1.4,c.55.1.4	111697,111698
3epqA	302	9.510		
3gg4A	554	9.518		
3d7eO	505	10.18		
1v4sA	455	13.45	c.55.1.3,c.55.1.3	100309,100310
1t6cA	315	14.03	c.55.1.8,c.55.1.8	106558,106559
3l0qA	554	14.05		
2eixA	243	14.45		
2pi1A	334	17.13		
1u6zA	513	19.52	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
2ch5A	347	21.48	c.55.1.5,c.55.1.5	130453,130454
2q2rA	373	21.49		
2itmA	484	23.97		
2bgiA	272	25.57		
2dbqA	334	28.02		
2bmwA	304	28.44	b.43.4.2,c.25.1.1	128815,128816
3bexA	249	28.53	c.55.1.13,c.55.1.13	155198,155199
1d5tA	433	29.07	c.3.1.3,d.16.1.6	30422,37986
1czaN	917	32.64	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
2we8A	386	32.68		
1qh8A	478	33.68	c.92.2.3	35633
3cetA	334	34.71		
1y8qA	346	35.85		
2h3gX	268	37.08		
1dxyA	333	37.09	c.2.1.4,c.23.12.1	30094,31354
3ejwA	315	37.21		
2cdqA	510	38.05	c.73.1.3,d.58.18.10,d.58.18.10	130290,130291,130292
3aapA	353	38.41		
1fdrA	248	43.82	b.43.4.2,c.25.1.1	25653,31543
3lrxA	158	47.95		
1ig8A	486	49.67	c.55.1.3,c.55.1.3	64746,64747
3ifrA	508	49.97		
2eq6A	464	53.33		
2wtbA	725	54.26		
1fdr	248	58.95		
3k1aA	491	59.56		
3mdqA	315	60.04		
1wwkA	307	60.05		
3kljA	385	60.88		
2v3aA	384	64.21		
1q1rA	431	68.39	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
3jvpA	572	73.33		
3gg9A	352	75.38		
1topA	162	75.67	a.39.1.5	17223
2d0iA	333	76.25		
3kb6A	334	77.09		
3c0bA	334	79.54		
1a0dA	440	79.88	c.1.15.3	29533
3bp8A	406	79.92	a.4.5.63,c.55.1.10,c.55.1.10	155463,155464,155465
2uytA	489	81.41		
2wulA	118	88.23