# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1huxA 270 0.1687 c.55.1.5 61278 2aa4A 289 0.1696 c.55.1.10,c.55.1.10 126465,126466 2gupA 292 0.2040 c.55.1.10,c.55.1.10 135744,135745 2e2oA 299 0.3468 2ap1A 327 0.4999 c.55.1.10,c.55.1.10 127108,127109 1sz2A 332 0.5597 c.55.1.7 112169 1zc6A 305 0.6430 c.55.1.5,c.55.1.5 124888,124889 3htvA 310 0.7477 2gtdA 251 1.176 c.55.1.13,c.55.1.13 135634,135635 3i8bA 515 1.196 1zbsA 291 1.225 c.55.1.5,c.55.1.5 124870,124871 3hz6A 511 1.401 3h46O 506 1.430 3lm2A 226 1.698 3mcpA 366 2.390 3hi0A 508 2.529 2qm1A 326 2.559 1xc3A 302 2.642 c.55.1.10,c.55.1.10 115102,115103 3ll3A 504 3.019 1woqA 267 3.760 c.55.1.10,c.55.1.10 109462,109463 3gbtA 504 3.813 3h3nO 506 3.897 2zf5O 497 5.501 2f9wA 271 5.711 c.55.1.13,c.55.1.13 133174,133175 1qh8B 519 5.726 c.92.2.3 35634 1m1nB 522 5.743 c.92.2.3 78418 1z6rA 406 6.083 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2hoeA 380 6.530 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2eixA 243 6.917 2d4wA 504 7.429 3h6eA 482 7.549 3flcO 518 8.039 3epqA 302 8.245 1r59O 505 9.038 c.55.1.4,c.55.1.4 111697,111698 1k47A 337 9.651 d.14.1.5,d.58.26.4 72040,72041 1bu6O 501 10.01 c.55.1.4,c.55.1.4 33499,33500 3l0qA 554 10.23 2w40A 503 10.54 3ezwA 526 10.85 2ch5A 347 11.22 c.55.1.5,c.55.1.5 130453,130454 2ewsA 287 11.32 c.55.1.14 146991 1t6cA 315 11.94 c.55.1.8,c.55.1.8 106558,106559 3d7eO 505 12.59 3gg4A 554 15.38 1v4sA 455 18.20 c.55.1.3,c.55.1.3 100309,100310 2pi1A 334 18.34 3bexA 249 20.58 c.55.1.13,c.55.1.13 155198,155199 2we8A 386 22.10 2h3gX 268 23.26 2bmwA 304 23.27 b.43.4.2,c.25.1.1 128815,128816 2bgiA 272 23.57 1u6zA 513 25.10 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1qh8A 478 25.99 c.92.2.3 35633 3cetA 334 26.97 2q2rA 373 31.76 2dbqA 334 32.08 1ogiA 303 35.29 b.43.4.2,c.25.1.1 92914,92915 1fdrA 248 36.48 b.43.4.2,c.25.1.1 25653,31543 3aapA 353 36.63 3ejwA 315 37.93 2itmA 484 38.91 2d0iA 333 40.25 1fdr 248 40.49 3ifrA 508 42.66 1d5tA 433 47.92 c.3.1.3,d.16.1.6 30422,37986 3k1aA 491 48.07 2r6hA 290 49.36 1czaN 917 50.35 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1dxyA 333 51.60 c.2.1.4,c.23.12.1 30094,31354 2wtbA 725 51.62 1wwkA 307 52.43 3lrxA 158 56.67 3jvpA 572 58.55 2v3aA 384 62.23 1y8qA 346 62.34 2qgnA 322 62.69 2uytA 489 66.61 2cdqA 510 67.05 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 1q1rA 431 67.09 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3kljA 385 67.51 3aekA 437 67.86 3hjhA 483 72.53 3mdqA 315 73.20 2nshA 169 76.97 2p6pA 384 78.89 1krhA 338 79.15 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3c0bA 334 81.19 1ig8A 486 85.64 c.55.1.3,c.55.1.3 64746,64747 3gg9A 352 86.41 3bp8A 406 87.12 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465