# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gupA 292 0.1288 c.55.1.10,c.55.1.10 135744,135745 1huxA 270 0.1599 c.55.1.5 61278 2aa4A 289 0.1708 c.55.1.10,c.55.1.10 126465,126466 2ap1A 327 0.4071 c.55.1.10,c.55.1.10 127108,127109 1sz2A 332 0.4489 c.55.1.7 112169 2e2oA 299 0.5320 2gtdA 251 0.8712 c.55.1.13,c.55.1.13 135634,135635 1zc6A 305 0.996 c.55.1.5,c.55.1.5 124888,124889 3htvA 310 1.000 3i8bA 515 1.559 3hz6A 511 1.625 3h46O 506 1.786 2qm1A 326 1.816 3hi0A 508 1.890 3mcpA 366 2.245 3lm2A 226 2.324 1xc3A 302 2.607 c.55.1.10,c.55.1.10 115102,115103 1zbsA 291 2.612 c.55.1.5,c.55.1.5 124870,124871 3ll3A 504 2.859 1z6rA 406 3.568 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2hoeA 380 3.922 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1woqA 267 4.014 c.55.1.10,c.55.1.10 109462,109463 3gbtA 504 4.455 3h3nO 506 4.522 2zf5O 497 6.477 2f9wA 271 6.680 c.55.1.13,c.55.1.13 133174,133175 1m1nB 522 8.144 c.92.2.3 78418 1k47A 337 8.744 d.14.1.5,d.58.26.4 72040,72041 2d4wA 504 8.805 3h6eA 482 9.061 2eixA 243 9.084 1r59O 505 9.085 c.55.1.4,c.55.1.4 111697,111698 1qh8B 519 9.288 c.92.2.3 35634 3epqA 302 9.766 3flcO 518 10.10 1t6cA 315 10.15 c.55.1.8,c.55.1.8 106558,106559 2ewsA 287 12.25 c.55.1.14 146991 1bu6O 501 13.05 c.55.1.4,c.55.1.4 33499,33500 2w40A 503 14.83 3ezwA 526 15.53 3l0qA 554 16.13 2pi1A 334 16.28 1u6zA 513 17.05 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3d7eO 505 17.63 3gg4A 554 18.82 2ch5A 347 20.35 c.55.1.5,c.55.1.5 130453,130454 2bgiA 272 23.02 3bexA 249 23.61 c.55.1.13,c.55.1.13 155198,155199 3cetA 334 24.55 2q2rA 373 26.45 2bmwA 304 27.89 b.43.4.2,c.25.1.1 128815,128816 1v4sA 455 29.30 c.55.1.3,c.55.1.3 100309,100310 2dbqA 334 29.72 2we8A 386 29.91 1wwkA 307 32.48 1fdrA 248 33.79 b.43.4.2,c.25.1.1 25653,31543 3bp8A 406 34.05 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2d0iA 333 35.51 3ejwA 315 36.26 1fdr 248 39.91 1qh8A 478 41.59 c.92.2.3 35633 3aapA 353 41.97 2itmA 484 42.34 1y8qA 346 43.45 1d5tA 433 43.80 c.3.1.3,d.16.1.6 30422,37986 1dxyA 333 47.14 c.2.1.4,c.23.12.1 30094,31354 3ifrA 508 47.14 3k1aA 491 50.63 2h3gX 268 51.79 3lrxA 158 53.55 2uytA 489 56.25 1czaN 917 57.15 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1ogiA 303 57.58 b.43.4.2,c.25.1.1 92914,92915 2eq6A 464 58.75 1q1rA 431 59.33 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3kljA 385 59.36 3jvpA 572 64.40 2qgnA 322 71.02 2cdqA 510 74.04 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 3mbjA 291 74.78 3iwaA 472 75.15 2nshA 169 75.66 3aekA 437 76.17 2wtbA 725 76.81 2v3aA 384 83.97 3f8dA 323 87.37 2r6hA 290 87.83