# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e2oA 299 0.001774 2aa4A 289 0.01098 c.55.1.10,c.55.1.10 126465,126466 1zbsA 291 0.01643 c.55.1.5,c.55.1.5 124870,124871 1woqA 267 0.04300 c.55.1.10,c.55.1.10 109462,109463 3h46O 506 0.05182 1zc6A 305 0.07377 c.55.1.5,c.55.1.5 124888,124889 3hi0A 508 0.08033 1sz2A 332 0.1268 c.55.1.7 112169 3i8bA 515 0.1295 2ch5A 347 0.1410 c.55.1.5,c.55.1.5 130453,130454 2h3gX 268 0.1829 2gtdA 251 0.1961 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 0.2189 c.55.1.10,c.55.1.10 127108,127109 2d4wA 504 0.2683 3h3nO 506 0.3171 2gupA 292 0.3229 c.55.1.10,c.55.1.10 135744,135745 3htvA 310 0.3635 3hz6A 511 0.3840 2w40A 503 0.4762 1huxA 270 0.4852 c.55.1.5 61278 2zf5O 497 0.5128 1t6cA 315 0.5321 c.55.1.8,c.55.1.8 106558,106559 2qm1A 326 0.5485 3ll3A 504 0.6247 3lm2A 226 0.6669 1bu6O 501 0.6777 c.55.1.4,c.55.1.4 33499,33500 1z6rA 406 0.8447 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3ezwA 526 0.9031 3bexA 249 0.9537 c.55.1.13,c.55.1.13 155198,155199 3gbtA 504 1.056 1xc3A 302 1.145 c.55.1.10,c.55.1.10 115102,115103 2hoeA 380 1.414 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3mcpA 366 1.442 3mdqA 315 1.581 3d7eO 505 1.809 3aapA 353 1.904 1r59O 505 2.176 c.55.1.4,c.55.1.4 111697,111698 3flcO 518 2.414 3ifrA 508 2.517 2itmA 484 2.913 2f9wA 271 3.783 c.55.1.13,c.55.1.13 133174,133175 3bp8A 406 3.882 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3h6eA 482 4.520 1v4sA 455 5.017 c.55.1.3,c.55.1.3 100309,100310 3cerA 343 5.127 1k47A 337 5.304 d.14.1.5,d.58.26.4 72040,72041 2eixA 243 5.670 3lrxA 158 5.677 1u6zA 513 5.938 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3jvpA 572 6.013 2ok8A 316 6.546 3gg4A 554 7.206 1czaN 917 10.31 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2ewsA 287 11.45 c.55.1.14 146991 3l0qA 554 12.53 1v0lA 313 12.66 c.1.8.3 108207 2bgiA 272 12.94 2q2rA 373 13.48 3epqA 302 14.62 2r6hA 290 18.60 1fdrA 248 21.42 b.43.4.2,c.25.1.1 25653,31543 3lb8A 436 25.75 3f9mA 470 27.56 1qczA 169 27.67 c.23.8.1 31276 1fdr 248 31.07 3iwaA 472 31.09 1dl2A 511 36.41 a.102.2.1 18844 2iyfA 430 38.27 3kljA 385 38.50 1krhA 338 40.06 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2gelA 231 40.11 1di6A 195 40.20 c.57.1.1 33863 2uytA 489 42.18 3cj1A 456 42.93 2bmwA 304 45.57 b.43.4.2,c.25.1.1 128815,128816 2bhuA 602 45.84 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1a8pA 258 50.15 b.43.4.2,c.25.1.1 25654,31544 2qipA 165 53.58 2q8xA 331 54.38 1qh8A 478 56.35 c.92.2.3 35633 2oi2A 292 56.90 1ogiA 303 57.76 b.43.4.2,c.25.1.1 92914,92915 2fsjA 346 63.12 c.55.1.12,c.55.1.12 134025,134026 1spvA 184 65.87 c.50.1.2 98957 3k1aA 491 68.70 3fg2P 404 69.33 2btdA 210 71.17 3fpkA 251 72.39 1gciA 269 74.79 c.41.1.1 32503 2ei9A 240 76.38 2p6pA 384 77.87 1mwmA 320 81.31 c.55.1.1,c.55.1.1 79580,79581 1e4fT 419 81.89 c.55.1.1,c.55.1.1 33453,33454 3hjhA 483 82.01 3kkdA 237 83.17 1bx1A 314 83.50 b.43.4.2,c.25.1.1 25629,31519 3ejwA 315 84.22 2v3aA 384 84.83 2z1aA 552 86.70 d.114.1.1,d.159.1.2 153927,153928 2pajA 492 86.93 b.92.1.4,c.1.9.9 149344,149345 2dh2A 424 87.78 3l06A 359 89.21 2v1pA 467 89.77 c.67.1.2 152410