# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gupA 292 0.1530 c.55.1.10,c.55.1.10 135744,135745 1sz2A 332 0.2051 c.55.1.7 112169 2e2oA 299 0.2846 2gtdA 251 0.3215 c.55.1.13,c.55.1.13 135634,135635 1zc6A 305 0.3891 c.55.1.5,c.55.1.5 124888,124889 2aa4A 289 0.4041 c.55.1.10,c.55.1.10 126465,126466 3htvA 310 0.4499 1huxA 270 0.6366 c.55.1.5 61278 2ap1A 327 0.8804 c.55.1.10,c.55.1.10 127108,127109 1zbsA 291 1.014 c.55.1.5,c.55.1.5 124870,124871 2ch5A 347 1.210 c.55.1.5,c.55.1.5 130453,130454 2qm1A 326 1.743 3hi0A 508 1.867 3h46O 506 1.947 3lm2A 226 2.413 2f9wA 271 2.487 c.55.1.13,c.55.1.13 133174,133175 3hz6A 511 2.791 1xc3A 302 2.824 c.55.1.10,c.55.1.10 115102,115103 3ll3A 504 3.486 2hoeA 380 3.568 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3i8bA 515 3.873 3h3nO 506 4.038 2h3gX 268 4.427 1bu6O 501 4.468 c.55.1.4,c.55.1.4 33499,33500 3l0qA 554 4.516 3ezwA 526 4.697 3gbtA 504 5.405 3flcO 518 5.658 3gg4A 554 6.194 3d7eO 505 6.844 3h6eA 482 6.891 2d4wA 504 7.442 3epqA 302 7.466 2ewsA 287 7.722 c.55.1.14 146991 2w40A 503 7.876 1r59O 505 8.240 c.55.1.4,c.55.1.4 111697,111698 1z6rA 406 8.533 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1qh8B 519 8.862 c.92.2.3 35634 1t6cA 315 9.363 c.55.1.8,c.55.1.8 106558,106559 3bexA 249 10.32 c.55.1.13,c.55.1.13 155198,155199 2zf5O 497 11.45 1v4sA 455 13.50 c.55.1.3,c.55.1.3 100309,100310 3mcpA 366 13.98 2itmA 484 14.00 1k47A 337 16.78 d.14.1.5,d.58.26.4 72040,72041 1m1nB 522 20.72 c.92.2.3 78418 2xdqA 460 24.49 1ig8A 486 25.61 c.55.1.3,c.55.1.3 64746,64747 1woqA 267 30.97 c.55.1.10,c.55.1.10 109462,109463 2pi1A 334 32.34 3bp8A 406 33.02 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2bmwA 304 36.30 b.43.4.2,c.25.1.1 128815,128816 1d5tA 433 36.67 c.3.1.3,d.16.1.6 30422,37986 3jvpA 572 36.92 1q1rA 431 38.00 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2dbqA 334 38.87 2d0iA 333 40.72 3ifrA 508 41.64 1dxyA 333 43.36 c.2.1.4,c.23.12.1 30094,31354 2nshA 169 44.31 1czaN 917 45.75 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2v3aA 384 46.01 3aapA 353 46.73 3k5iA 403 47.49 3kljA 385 48.57 3k1aA 491 50.69 3mdqA 315 53.03 2uytA 489 53.44 1l5jA 865 54.05 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2eixA 243 55.60 2q2rA 373 55.92 2bgiA 272 57.38 2p6pA 384 58.32 3cetA 334 61.71 3f9mA 470 66.60 2qdxA 257 66.88 3lb8A 436 67.34 1fdr 248 70.93 3hjhA 483 71.80 1qh8A 478 72.70 c.92.2.3 35633 1v0lA 313 74.22 c.1.8.3 108207 2cduA 452 75.21 2yhxA 457 75.77 i.12.1.1 46024 1topA 162 76.93 a.39.1.5 17223 3fg2P 404 79.01 3c0bA 334 80.15 2x58A 727 81.40 1j5sA 463 83.72 c.1.9.8 71580 1ogiA 303 83.91 b.43.4.2,c.25.1.1 92914,92915 2wtbA 725 84.81 1y8qA 346 87.77 2g1uA 155 88.65