# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1sz2A 332 0.1807 c.55.1.7 112169 2gupA 292 0.2271 c.55.1.10,c.55.1.10 135744,135745 2gtdA 251 0.2659 c.55.1.13,c.55.1.13 135634,135635 1huxA 270 0.4406 c.55.1.5 61278 2qm1A 326 0.5798 2ch5A 347 0.6198 c.55.1.5,c.55.1.5 130453,130454 3l0qA 554 0.6991 1zc6A 305 0.8385 c.55.1.5,c.55.1.5 124888,124889 2e2oA 299 1.231 3hi0A 508 1.257 1zbsA 291 1.277 c.55.1.5,c.55.1.5 124870,124871 3gg4A 554 1.546 2hoeA 380 1.635 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2aa4A 289 1.666 c.55.1.10,c.55.1.10 126465,126466 2bmwA 304 2.089 b.43.4.2,c.25.1.1 128815,128816 3ll3A 504 2.188 3h46O 506 2.742 1ogiA 303 3.020 b.43.4.2,c.25.1.1 92914,92915 3h3nO 506 3.047 1z6rA 406 3.297 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1l5jA 865 3.418 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1t6cA 315 3.527 c.55.1.8,c.55.1.8 106558,106559 3htvA 310 3.541 3gbtA 504 3.813 2zf5O 497 4.090 2ivnA 330 4.285 2ap1A 327 4.953 c.55.1.10,c.55.1.10 127108,127109 1woqA 267 5.020 c.55.1.10,c.55.1.10 109462,109463 1bu6O 501 5.378 c.55.1.4,c.55.1.4 33499,33500 1ig8A 486 5.773 c.55.1.3,c.55.1.3 64746,64747 2f9wA 271 5.805 c.55.1.13,c.55.1.13 133174,133175 2h3gX 268 6.135 3lm2A 226 6.532 2w40A 503 6.901 3hz6A 511 7.512 1qh8A 478 7.654 c.92.2.3 35633 1u6zA 513 8.437 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1m1nB 522 8.617 c.92.2.3 78418 3mcpA 366 8.713 1xc3A 302 9.444 c.55.1.10,c.55.1.10 115102,115103 2i7nA 360 11.78 c.55.1.14,c.55.1.14 147547,147548 3ezwA 526 13.01 2d4wA 504 14.28 3bp8A 406 14.76 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1va6A 518 14.88 d.128.1.4 113598 3bexA 249 17.29 c.55.1.13,c.55.1.13 155198,155199 2eixA 243 19.03 3hjhA 483 19.09 2z86A 625 20.69 3h75A 350 20.73 1nrwA 288 20.93 c.108.1.10 86128 2ewsA 287 21.37 c.55.1.14 146991 2w2gA 264 23.20 3flcO 518 24.00 2itmA 484 24.00 3h1qA 272 24.18 3cetA 334 25.30 1jb9A 316 26.69 b.43.4.2,c.25.1.1 62840,62841 2q8nA 460 29.07 1v4sA 455 31.13 c.55.1.3,c.55.1.3 100309,100310 3hm7A 448 31.19 3c0bA 334 32.36 2bgiA 272 33.39 3cj1A 456 34.07 3epqA 302 34.16 2icsA 379 36.94 b.92.1.8,c.1.9.14 137241,137242 2rc5A 314 37.49 2pajA 492 38.42 b.92.1.4,c.1.9.9 149344,149345 2w9xA 366 38.82 2qdxA 257 40.14 1czaN 917 40.48 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1je6A 275 41.54 b.1.1.2,d.19.1.1 71638,71639 2rjoA 332 42.50 2gruA 368 42.84 3gg9A 352 42.95 1y8qA 346 43.64 2xdqA 460 45.07 1fdr 248 46.95 2higA 487 48.67 3lo8A 311 48.85 3d7eO 505 48.96 3iurA 693 49.12 2bg9A 370 49.89 2e8yA 718 51.28 1r59O 505 53.05 c.55.1.4,c.55.1.4 111697,111698 1fdrA 248 53.07 b.43.4.2,c.25.1.1 25653,31543 1cqxA 403 53.32 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2wadA 680 53.42 2zklA 369 55.71 3ef2A 293 57.06 1w6sA 599 58.74 b.70.1.1 114284 2cunA 410 61.04 3k1aA 491 61.66 3aekA 437 62.92 1sazA 381 63.17 c.55.1.2,c.55.1.2 118925,118926 2wzhA 737 63.92 3kqfA 265 67.92 2nshA 169 69.52 1fuxA 166 70.19 b.17.1.2 60034 3bblA 287 75.29 3ddoA 253 75.72 2eihA 343 79.12 2eklA 313 79.70 1d5tA 433 82.33 c.3.1.3,d.16.1.6 30422,37986 3gbgA 276 85.09 1ht6A 405 88.62 b.71.1.1,c.1.8.1 83629,83630 3h6eA 482 88.71 3mdqA 315 89.21