# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gupA 292 0.1431 c.55.1.10,c.55.1.10 135744,135745 1sz2A 332 0.1759 c.55.1.7 112169 2gtdA 251 0.3067 c.55.1.13,c.55.1.13 135634,135635 3htvA 310 0.3993 2e2oA 299 0.4218 1zc6A 305 0.4410 c.55.1.5,c.55.1.5 124888,124889 2aa4A 289 0.4903 c.55.1.10,c.55.1.10 126465,126466 1huxA 270 0.5207 c.55.1.5 61278 3hi0A 508 1.228 1zbsA 291 1.580 c.55.1.5,c.55.1.5 124870,124871 2ch5A 347 1.592 c.55.1.5,c.55.1.5 130453,130454 2qm1A 326 1.646 3h46O 506 2.092 2ap1A 327 2.148 c.55.1.10,c.55.1.10 127108,127109 2f9wA 271 2.181 c.55.1.13,c.55.1.13 133174,133175 3lm2A 226 2.592 2h3gX 268 2.603 1xc3A 302 2.824 c.55.1.10,c.55.1.10 115102,115103 3hz6A 511 2.933 3i8bA 515 3.677 3h3nO 506 3.934 2hoeA 380 4.445 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1t6cA 315 4.698 c.55.1.8,c.55.1.8 106558,106559 1bu6O 501 4.699 c.55.1.4,c.55.1.4 33499,33500 3ll3A 504 4.957 3l0qA 554 5.064 3ezwA 526 5.583 1r59O 505 5.775 c.55.1.4,c.55.1.4 111697,111698 3flcO 518 6.564 3d7eO 505 7.019 3gbtA 504 7.377 3epqA 302 7.588 1z6rA 406 8.219 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3gg4A 554 8.319 2w40A 503 8.434 2d4wA 504 8.898 2ewsA 287 9.427 c.55.1.14 146991 3bexA 249 9.727 c.55.1.13,c.55.1.13 155198,155199 3h6eA 482 11.33 1qh8B 519 11.64 c.92.2.3 35634 1v4sA 455 12.60 c.55.1.3,c.55.1.3 100309,100310 2d0iA 333 15.15 2itmA 484 16.13 1ig8A 486 16.34 c.55.1.3,c.55.1.3 64746,64747 3mcpA 366 19.10 2zf5O 497 19.87 2xdqA 460 19.98 2pi1A 334 22.67 1m1nB 522 23.10 c.92.2.3 78418 1k47A 337 25.25 d.14.1.5,d.58.26.4 72040,72041 3aapA 353 31.95 3ifrA 508 33.79 1woqA 267 33.94 c.55.1.10,c.55.1.10 109462,109463 3bp8A 406 34.87 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3hjhA 483 35.54 1czaN 917 38.52 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 3jvpA 572 38.53 2q2rA 373 39.75 1qh8A 478 41.94 c.92.2.3 35633 3mdqA 315 43.34 3k1aA 491 44.15 2dbqA 334 44.50 3k5iA 403 47.20 3kljA 385 47.33 3cetA 334 49.27 2bmwA 304 49.51 b.43.4.2,c.25.1.1 128815,128816 2we8A 386 51.57 2v3aA 384 54.48 3f9mA 470 54.81 2x58A 727 56.17 2yhxA 457 56.40 i.12.1.1 46024 1dxyA 333 56.43 c.2.1.4,c.23.12.1 30094,31354 2cduA 452 57.14 2nshA 169 57.82 2p6pA 384 59.65 1q1rA 431 63.38 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3aekA 437 63.70 3lb8A 436 65.47 1l5jA 865 66.00 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1d5tA 433 68.63 c.3.1.3,d.16.1.6 30422,37986 1wwkA 307 70.12 2qdxA 257 73.81 2wtbA 725 74.26 1v0lA 313 74.80 c.1.8.3 108207 2uytA 489 76.09 3euoA 379 77.11 3fg2P 404 87.88 2bgiA 272 88.16 1knqA 175 89.24 c.37.1.17 72786 1j5sA 463 89.59 c.1.9.8 71580 3c0bA 334 89.69