# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.1842 c.55.1.10,c.55.1.10 126465,126466 2gupA 292 0.3006 c.55.1.10,c.55.1.10 135744,135745 3htvA 310 0.3828 1sz2A 332 0.4263 c.55.1.7 112169 1huxA 270 0.4415 c.55.1.5 61278 2ap1A 327 0.4559 c.55.1.10,c.55.1.10 127108,127109 1zc6A 305 0.5887 c.55.1.5,c.55.1.5 124888,124889 2gtdA 251 0.5921 c.55.1.13,c.55.1.13 135634,135635 2e2oA 299 0.6125 1zbsA 291 1.060 c.55.1.5,c.55.1.5 124870,124871 2qm1A 326 1.249 1t6cA 315 1.866 c.55.1.8,c.55.1.8 106558,106559 3h46O 506 2.210 2f9wA 271 2.244 c.55.1.13,c.55.1.13 133174,133175 1xc3A 302 2.285 c.55.1.10,c.55.1.10 115102,115103 3hi0A 508 2.518 1woqA 267 3.390 c.55.1.10,c.55.1.10 109462,109463 3epqA 302 3.798 2ch5A 347 3.808 c.55.1.5,c.55.1.5 130453,130454 3lm2A 226 4.487 3i8bA 515 5.038 3h3nO 506 5.092 3bexA 249 5.575 c.55.1.13,c.55.1.13 155198,155199 1z6rA 406 5.891 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2hoeA 380 6.086 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1bu6O 501 7.308 c.55.1.4,c.55.1.4 33499,33500 3mcpA 366 8.006 3hz6A 511 8.103 1r59O 505 8.854 c.55.1.4,c.55.1.4 111697,111698 3flcO 518 9.225 2bmwA 304 10.01 b.43.4.2,c.25.1.1 128815,128816 2ewsA 287 10.19 c.55.1.14 146991 2w40A 503 10.24 1qh8B 519 10.90 c.92.2.3 35634 1k47A 337 10.92 d.14.1.5,d.58.26.4 72040,72041 2d4wA 504 11.16 2h3gX 268 12.67 3ezwA 526 12.93 1v4sA 455 14.51 c.55.1.3,c.55.1.3 100309,100310 2q2rA 373 14.62 3l0qA 554 16.55 1m1nB 522 16.75 c.92.2.3 78418 1qh8A 478 18.80 c.92.2.3 35633 3d7eO 505 20.36 1u6zA 513 25.85 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1ig8A 486 25.85 c.55.1.3,c.55.1.3 64746,64747 3bp8A 406 27.63 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2eixA 243 28.54 3k1aA 491 29.71 1ogiA 303 30.56 b.43.4.2,c.25.1.1 92914,92915 2qgnA 322 33.06 2bgiA 272 33.46 3aapA 353 34.72 1dxyA 333 40.91 c.2.1.4,c.23.12.1 30094,31354 3h1qA 272 41.33 3cerA 343 44.01 2d0iA 333 51.09 3mdqA 315 55.21 3ll3A 504 55.26 2r6hA 290 55.67 1czaN 917 55.89 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1fdr 248 57.51 1d2vC 466 57.82 3cetA 334 59.01 1fdrA 248 59.96 b.43.4.2,c.25.1.1 25653,31543 2pi1A 334 62.13 1y8qA 346 62.69 2bi7A 384 66.72 c.4.1.3,d.16.1.7 146148,146149 3gbtA 504 68.18 2fsjA 346 68.36 c.55.1.12,c.55.1.12 134025,134026 1a8pA 258 70.38 b.43.4.2,c.25.1.1 25654,31544 3f9mA 470 70.83 2xdqA 460 71.28 2we8A 386 74.90 3gg4A 554 81.68 2nshA 169 84.31