# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gupA	292	0.3278	c.55.1.10,c.55.1.10	135744,135745
3htvA	310	0.3354		
1sz2A	332	0.3943	c.55.1.7	112169
2ap1A	327	0.4733	c.55.1.10,c.55.1.10	127108,127109
2e2oA	299	0.5083		
2aa4A	289	0.5218	c.55.1.10,c.55.1.10	126465,126466
2gtdA	251	0.7703	c.55.1.13,c.55.1.13	135634,135635
1zc6A	305	0.7721	c.55.1.5,c.55.1.5	124888,124889
1huxA	270	0.9268	c.55.1.5	61278
3h46O	506	1.749		
2qm1A	326	1.808		
1zbsA	291	1.811	c.55.1.5,c.55.1.5	124870,124871
3lm2A	226	2.445		
2ch5A	347	2.582	c.55.1.5,c.55.1.5	130453,130454
2f9wA	271	3.019	c.55.1.13,c.55.1.13	133174,133175
3epqA	302	3.932		
1xc3A	302	4.017	c.55.1.10,c.55.1.10	115102,115103
3h3nO	506	4.436		
3hz6A	511	5.015		
3i8bA	515	5.255		
3hi0A	508	5.291		
2h3gX	268	5.542		
2w40A	503	5.544		
1z6rA	406	6.233	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1bu6O	501	6.280	c.55.1.4,c.55.1.4	33499,33500
2hoeA	380	6.721	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
3ezwA	526	6.853		
3flcO	518	7.439		
1v4sA	455	7.458	c.55.1.3,c.55.1.3	100309,100310
3bp8A	406	9.248	a.4.5.63,c.55.1.10,c.55.1.10	155463,155464,155465
3d7eO	505	9.286		
2d4wA	504	9.457		
1t6cA	315	10.17	c.55.1.8,c.55.1.8	106558,106559
1woqA	267	10.38	c.55.1.10,c.55.1.10	109462,109463
3l0qA	554	10.41		
3mcpA	366	11.05		
2ewsA	287	12.17	c.55.1.14	146991
3gbtA	504	14.31		
3ll3A	504	14.78		
1qh8B	519	15.51	c.92.2.3	35634
1k47A	337	16.17	d.14.1.5,d.58.26.4	72040,72041
1qh8A	478	16.35	c.92.2.3	35633
1r59O	505	16.45	c.55.1.4,c.55.1.4	111697,111698
3h6eA	482	21.90		
1m1nB	522	22.13	c.92.2.3	78418
1d5tA	433	22.86	c.3.1.3,d.16.1.6	30422,37986
1dxyA	333	23.12	c.2.1.4,c.23.12.1	30094,31354
3bexA	249	26.29	c.55.1.13,c.55.1.13	155198,155199
2pi1A	334	33.59		
3k1aA	491	34.37		
1u6zA	513	35.38	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
2itmA	484	39.25		
2d0iA	333	40.86		
3cetA	334	40.91		
2q2rA	373	41.12		
3gg4A	554	41.82		
2zf5O	497	42.89		
1ig8A	486	43.63	c.55.1.3,c.55.1.3	64746,64747
2v3aA	384	44.32		
1czaN	917	45.48	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
2x58A	727	46.59		
3f9mA	470	48.35		
2r6hA	290	50.86		
2ei9A	240	54.44		
1y8qA	346	56.32		
2p6pA	384	57.61		
2wtbA	725	61.75		
2dbqA	334	61.94		
2bgiA	272	62.48		
2eixA	243	64.65		
3lrxA	158	70.04		
2qgnA	322	71.07		
1topA	162	71.73	a.39.1.5	17223
3kljA	385	73.99		
2dsnA	387	77.44		
2we8A	386	79.36		
1q1rA	431	81.18	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
3ifrA	508	87.53