# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.2462 c.55.1.10,c.55.1.10 126465,126466 2gupA 292 0.2979 c.55.1.10,c.55.1.10 135744,135745 3htvA 310 0.5212 1sz2A 332 0.6404 c.55.1.7 112169 1zc6A 305 0.7851 c.55.1.5,c.55.1.5 124888,124889 2gtdA 251 0.8480 c.55.1.13,c.55.1.13 135634,135635 2e2oA 299 0.8700 1huxA 270 0.9445 c.55.1.5 61278 1zbsA 291 0.9623 c.55.1.5,c.55.1.5 124870,124871 2ch5A 347 1.253 c.55.1.5,c.55.1.5 130453,130454 2ap1A 327 1.534 c.55.1.10,c.55.1.10 127108,127109 2qm1A 326 2.353 2f9wA 271 2.710 c.55.1.13,c.55.1.13 133174,133175 3hi0A 508 2.851 3h46O 506 2.961 3lm2A 226 3.031 3hz6A 511 3.984 1xc3A 302 4.807 c.55.1.10,c.55.1.10 115102,115103 3ll3A 504 6.003 3h3nO 506 6.309 3epqA 302 6.514 2w40A 503 6.515 2h3gX 268 6.596 1t6cA 315 7.316 c.55.1.8,c.55.1.8 106558,106559 2ewsA 287 7.356 c.55.1.14 146991 1bu6O 501 7.546 c.55.1.4,c.55.1.4 33499,33500 1r59O 505 8.798 c.55.1.4,c.55.1.4 111697,111698 3i8bA 515 8.851 3flcO 518 10.44 2eixA 243 10.65 3l0qA 554 11.22 3d7eO 505 11.31 3gbtA 504 11.43 3ezwA 526 11.67 2hoeA 380 12.52 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2d4wA 504 12.62 3h6eA 482 12.80 1qh8B 519 13.47 c.92.2.3 35634 1k47A 337 15.43 d.14.1.5,d.58.26.4 72040,72041 1v4sA 455 16.83 c.55.1.3,c.55.1.3 100309,100310 3bexA 249 16.85 c.55.1.13,c.55.1.13 155198,155199 1z6rA 406 17.66 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2zf5O 497 18.34 1woqA 267 18.85 c.55.1.10,c.55.1.10 109462,109463 3mcpA 366 19.14 2bmwA 304 19.18 b.43.4.2,c.25.1.1 128815,128816 1qh8A 478 19.87 c.92.2.3 35633 2bgiA 272 20.33 1m1nB 522 22.44 c.92.2.3 78418 3k1aA 491 24.64 3gg4A 554 25.90 1u6zA 513 27.49 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1czaN 917 39.92 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2ei9A 240 46.66 3cetA 334 46.87 1dxyA 333 48.64 c.2.1.4,c.23.12.1 30094,31354 1d5tA 433 49.05 c.3.1.3,d.16.1.6 30422,37986 3bp8A 406 49.44 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2d0iA 333 49.53 2qgnA 322 49.90 1ogiA 303 53.59 b.43.4.2,c.25.1.1 92914,92915 2we8A 386 53.86 1ig8A 486 55.12 c.55.1.3,c.55.1.3 64746,64747 2pi1A 334 55.75 2q2rA 373 56.87 2itmA 484 56.98 2wtbA 725 61.56 1fdrA 248 61.75 b.43.4.2,c.25.1.1 25653,31543 1y8qA 346 63.08 3aapA 353 64.23 3mdqA 315 64.71 1topA 162 64.71 a.39.1.5 17223 1fdr 248 67.51 3c0bA 334 67.76 3ifrA 508 70.31 1q1rA 431 70.98 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3h1qA 272 76.18 2r6hA 290 82.74 2x58A 727 84.20 2dsnA 387 85.07 3f9mA 470 86.25 2p6pA 384 86.26