# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e2oA	299	0.03927		
2aa4A	289	0.07515	c.55.1.10,c.55.1.10	126465,126466
1zbsA	291	0.1781	c.55.1.5,c.55.1.5	124870,124871
1zc6A	305	0.2698	c.55.1.5,c.55.1.5	124888,124889
2gtdA	251	0.4380	c.55.1.13,c.55.1.13	135634,135635
1huxA	270	0.5755	c.55.1.5	61278
3lm2A	226	0.9423		
3i8bA	515	1.368		
2h3gX	268	1.438		
3ll3A	504	1.668		
3bexA	249	1.675	c.55.1.13,c.55.1.13	155198,155199
1woqA	267	1.692	c.55.1.10,c.55.1.10	109462,109463
1sz2A	332	1.996	c.55.1.7	112169
1t6cA	315	2.242	c.55.1.8,c.55.1.8	106558,106559
1u6zA	513	2.365	a.211.1.5,c.55.1.8,c.55.1.8	119608,119609,119610
1r59O	505	2.714	c.55.1.4,c.55.1.4	111697,111698
1xc3A	302	2.994	c.55.1.10,c.55.1.10	115102,115103
3aapA	353	4.274		
3htvA	310	4.809		
3h46O	506	4.916		
2zf5O	497	5.210		
2ap1A	327	5.803	c.55.1.10,c.55.1.10	127108,127109
3bp8A	406	6.308	a.4.5.63,c.55.1.10,c.55.1.10	155463,155464,155465
3hz6A	511	7.006		
3cerA	343	7.441		
2qm1A	326	7.708		
3h6eA	482	8.062		
3epqA	302	8.285		
3gbtA	504	8.452		
2gelA	231	8.672		
2ch5A	347	8.853	c.55.1.5,c.55.1.5	130453,130454
2f9wA	271	9.341	c.55.1.13,c.55.1.13	133174,133175
3ezwA	526	9.765		
3h3nO	506	10.24		
3hi0A	508	10.25		
3mdqA	315	12.95		
2d4wA	504	13.17		
1z6rA	406	13.90	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1v4sA	455	15.42	c.55.1.3,c.55.1.3	100309,100310
2gupA	292	17.93	c.55.1.10,c.55.1.10	135744,135745
2ewsA	287	19.81	c.55.1.14	146991
1czaN	917	22.28	c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3	33463,33464,33465,33466
3jvpA	572	23.34		
2bgiA	272	24.08		
1bu6O	501	24.93	c.55.1.4,c.55.1.4	33499,33500
2itmA	484	25.32		
2w40A	503	27.61		
3iwaA	472	27.69		
3f9mA	470	31.35		
3mcpA	366	35.31		
3lb8A	436	35.82		
3flcO	518	36.31		
2ok8A	316	40.18		
3cetA	334	43.02		
1fdrA	248	47.43	b.43.4.2,c.25.1.1	25653,31543
1v0lA	313	49.81	c.1.8.3	108207
1e4fT	419	51.04	c.55.1.1,c.55.1.1	33453,33454
1a8pA	258	52.89	b.43.4.2,c.25.1.1	25654,31544
2fsjA	346	54.84	c.55.1.12,c.55.1.12	134025,134026
1di6A	195	57.05	c.57.1.1	33863
3ifrA	508	58.12		
3i4jA	430	64.03		
1qczA	169	67.20	c.23.8.1	31276
1fdr	248	69.96		
2e7uA	424	74.16		
2yhx	457	75.86		
2dh2A	424	79.23		
3d03A	274	80.79	d.159.1.11	157161
1jaeA	471	81.26	b.71.1.1,c.1.8.1	27773,28760
2uytA	489	82.00		
3kljA	385	83.22