# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.1252 c.55.1.10,c.55.1.10 126465,126466 1sz2A 332 0.1963 c.55.1.7 112169 2gtdA 251 0.2308 c.55.1.13,c.55.1.13 135634,135635 2e2oA 299 0.2601 1zbsA 291 0.2770 c.55.1.5,c.55.1.5 124870,124871 1huxA 270 0.3297 c.55.1.5 61278 2ap1A 327 0.4073 c.55.1.10,c.55.1.10 127108,127109 3bexA 249 0.4733 c.55.1.13,c.55.1.13 155198,155199 3h46O 506 0.6201 1zc6A 305 0.7376 c.55.1.5,c.55.1.5 124888,124889 1woqA 267 0.8721 c.55.1.10,c.55.1.10 109462,109463 3htvA 310 0.996 2qm1A 326 1.240 2gupA 292 1.371 c.55.1.10,c.55.1.10 135744,135745 1z6rA 406 1.392 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3h3nO 506 1.561 3lm2A 226 1.670 1xc3A 302 1.791 c.55.1.10,c.55.1.10 115102,115103 3bp8A 406 1.939 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2hoeA 380 2.081 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3i8bA 515 2.172 1u6zA 513 2.957 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3flcO 518 3.554 2f9wA 271 3.609 c.55.1.13,c.55.1.13 133174,133175 2ch5A 347 3.639 c.55.1.5,c.55.1.5 130453,130454 3epqA 302 3.872 3ezwA 526 4.218 1t6cA 315 4.263 c.55.1.8,c.55.1.8 106558,106559 2w40A 503 4.727 3hz6A 511 4.807 2h3gX 268 4.887 2zf5O 497 5.300 3mcpA 366 5.327 3gbtA 504 5.676 3hi0A 508 6.544 1r59O 505 6.561 c.55.1.4,c.55.1.4 111697,111698 3ll3A 504 6.787 1bu6O 501 6.791 c.55.1.4,c.55.1.4 33499,33500 2ewsA 287 7.045 c.55.1.14 146991 2d4wA 504 7.437 2gelA 231 7.872 3mdqA 315 10.19 1v4sA 455 11.81 c.55.1.3,c.55.1.3 100309,100310 2itmA 484 13.28 2ivnA 330 13.81 3aapA 353 13.94 3cj1A 456 15.40 3d7eO 505 15.70 3hjhA 483 16.91 3ifrA 508 17.55 3i4jA 430 18.99 3cerA 343 22.73 1e4fT 419 23.75 c.55.1.1,c.55.1.1 33453,33454 3f9mA 470 25.19 3floA 460 28.50 2q2rA 373 28.60 1jcfA 344 28.86 c.55.1.1,c.55.1.1 62878,62879 1qczA 169 31.95 c.23.8.1 31276 2ok8A 316 32.99 2bmwA 304 37.84 b.43.4.2,c.25.1.1 128815,128816 3h6eA 482 39.66 3ljkA 543 43.07 2fsjA 346 44.67 c.55.1.12,c.55.1.12 134025,134026 2nshA 169 47.86 1o4vA 183 48.47 c.23.8.1 86628 1ogiA 303 50.43 b.43.4.2,c.25.1.1 92914,92915 2r6hA 290 53.17 1fdrA 248 55.47 b.43.4.2,c.25.1.1 25653,31543 3cqyA 370 57.81 3jvpA 572 58.31 3cetA 334 60.99 1o0sA 605 61.61 c.2.1.7,c.58.1.3 86540,86541 1k47A 337 63.00 d.14.1.5,d.58.26.4 72040,72041 1bx1A 314 64.70 b.43.4.2,c.25.1.1 25629,31519 1a8pA 258 64.85 b.43.4.2,c.25.1.1 25654,31544 3hjbA 574 67.09 3ktnA 346 68.83 1gvhA 396 71.00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1dxyA 333 73.82 c.2.1.4,c.23.12.1 30094,31354 1di6A 195 78.84 c.57.1.1 33863 3ge6A 212 81.04 3ie7A 320 81.43 2eixA 243 83.54 1v04A 355 84.81 b.68.6.2 100240 3c0bA 334 85.94 1c93A 265 86.47 c.1.8.5 28998