# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e2oA 299 0.4527 1zbsA 291 0.6859 c.55.1.5,c.55.1.5 124870,124871 2qm1A 326 0.7051 2aa4A 289 1.074 c.55.1.10,c.55.1.10 126465,126466 2gupA 292 1.313 c.55.1.10,c.55.1.10 135744,135745 1huxA 270 1.359 c.55.1.5 61278 1z6rA 406 1.406 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3htvA 310 1.595 2h3gX 268 1.656 2hoeA 380 1.684 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3bp8A 406 1.908 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3f9mA 470 1.940 2f9wA 271 2.417 c.55.1.13,c.55.1.13 133174,133175 1sz2A 332 2.499 c.55.1.7 112169 1woqA 267 2.599 c.55.1.10,c.55.1.10 109462,109463 1xc3A 302 2.998 c.55.1.10,c.55.1.10 115102,115103 2ch5A 347 3.011 c.55.1.5,c.55.1.5 130453,130454 1u6zA 513 3.367 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1v4sA 455 3.485 c.55.1.3,c.55.1.3 100309,100310 2ap1A 327 3.513 c.55.1.10,c.55.1.10 127108,127109 1zc6A 305 3.713 c.55.1.5,c.55.1.5 124888,124889 1jcfA 344 3.746 c.55.1.1,c.55.1.1 62878,62879 2gtdA 251 3.860 c.55.1.13,c.55.1.13 135634,135635 1sazA 381 4.244 c.55.1.2,c.55.1.2 118925,118926 3bexA 249 4.647 c.55.1.13,c.55.1.13 155198,155199 3epqA 302 4.680 1ig8A 486 4.687 c.55.1.3,c.55.1.3 64746,64747 3lm2A 226 4.896 2ewsA 287 5.720 c.55.1.14 146991 2ivnA 330 6.158 1x3mA 415 6.186 c.55.1.2,c.55.1.2 121664,121665 3h1qA 272 6.303 2zf5O 497 6.677 3d2fA 675 7.191 1t6cA 315 7.344 c.55.1.8,c.55.1.8 106558,106559 3hz6A 511 8.080 3cqyA 370 8.476 2yhx 457 8.747 1bupA 386 8.804 c.55.1.1,c.55.1.1 33377,33378 3gbtA 504 9.294 3mcpA 366 9.459 2w49D 372 10.35 2qxlA 658 11.49 2yhxA 457 11.73 i.12.1.1 46024 3cipA 375 11.80 2e1zA 415 11.95 c.55.1.2,c.55.1.2 146631,146632 3a8yA 392 12.47 3khyA 384 12.50 3mdqA 315 12.52 1bu6O 501 12.52 c.55.1.4,c.55.1.4 33499,33500 3i8bA 515 12.66 3c0bA 334 13.13 1e4fT 419 13.93 c.55.1.1,c.55.1.1 33453,33454 3flcO 518 14.11 3hi0A 508 15.13 3ll3A 504 15.51 3hrgA 257 15.74 1mwmA 320 15.79 c.55.1.1,c.55.1.1 79580,79581 2q2rA 373 15.89 3i33A 404 15.98 2fxuA 375 16.92 c.55.1.1,c.55.1.1 134340,134341 3fzhA 381 17.05 3aapA 353 17.19 3h46O 506 17.52 1g99A 408 17.81 c.55.1.2,c.55.1.2 33457,33458 3h3nO 506 19.65 3js6A 355 20.07 2w40A 503 20.18 3cerA 343 20.42 3gl1A 387 21.12 2d4wA 504 22.34 1qz5A 375 24.00 c.55.1.1,c.55.1.1 96614,96615 2itmA 484 24.83 2zgyA 320 27.46 c.55.1.1,c.55.1.1 154425,154426 3d7eO 505 31.34 3ezwA 526 31.97 1czaN 917 34.32 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 3cetA 334 35.24 2gelA 231 39.19 3gg4A 554 45.46 1k8kA 418 54.97 c.55.1.1,c.55.1.1 68305,68306 3ifrA 508 59.19 3l0qA 554 62.80 2a6aA 218 66.52 c.55.1.9,c.55.1.9 126231,126232 3d4oA 293 68.17 3jvpA 572 69.81 1nbwA 607 71.39 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 3cnhA 200 72.89 2pl5A 366 75.49 c.69.1.40 149611 2b0cA 206 84.63 c.108.1.2 127633 2fsjA 346 84.71 c.55.1.12,c.55.1.12 134025,134026