# List of top-scoring protein chains for T0628.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b8aX	485	5.505		
1m113	238	11.76		
3h6eA	482	19.40		
2wsc1	241	24.19		
2gtdA	251	24.58	c.55.1.13,c.55.1.13	135634,135635
1ig8A	486	29.93	c.55.1.3,c.55.1.3	64746,64747
1zbsA	291	33.55	c.55.1.5,c.55.1.5	124870,124871
3bexA	249	35.71	c.55.1.13,c.55.1.13	155198,155199
2phcB	225	43.64	b.62.1.4,d.74.5.1	149466,149467
3gjyA	317	49.12		
2gmhA	584	58.81	c.3.1.2,d.16.1.8,d.58.1.6	135375,135376,135377
1zc6A	305	61.53	c.55.1.5,c.55.1.5	124888,124889
2qlvB	252	65.11	b.1.18.21,d.353.1.1	150867,150868
2orwA	184	68.03		
1vqqA	646	72.80	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1zxoA	291	73.08	c.55.1.5,c.55.1.5	125784,125785
1mwsA	646	74.20	d.17.4.5,d.175.1.1,e.3.1.1	79592,79593,79594
3g25A	501	74.98		
2aciA	418	77.20	d.126.1.4	126551
3khkA	544	78.17		
2o011	187	78.39		
2abrA	418	79.11	d.126.1.4	126530
1rxxA	421	80.15	d.126.1.4	98061
2a9gA	418	80.49	d.126.1.4	126435
2aafA	418	80.86	d.126.1.4	126471
2z1eA	338	86.86	d.79.4.1,d.139.1.1	153932,153933
2j4rA	308	88.30	c.55.1.8,c.55.1.8	147882,147883
1t6cA	315	89.24	c.55.1.8,c.55.1.8	106558,106559