# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gtdA 251 0.01565 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 0.03306 c.55.1.10,c.55.1.10 127108,127109 2aa4A 289 0.04782 c.55.1.10,c.55.1.10 126465,126466 2h3gX 268 0.05883 3htvA 310 0.07679 2r6hA 290 0.1397 2ewsA 287 0.2403 c.55.1.14 146991 2e2oA 299 0.2461 1sz2A 332 0.2494 c.55.1.7 112169 2gupA 292 0.2662 c.55.1.10,c.55.1.10 135744,135745 2hoeA 380 0.5261 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3bexA 249 0.8095 c.55.1.13,c.55.1.13 155198,155199 2qm1A 326 0.8249 1xc3A 302 0.9909 c.55.1.10,c.55.1.10 115102,115103 1zbsA 291 1.027 c.55.1.5,c.55.1.5 124870,124871 1woqA 267 1.239 c.55.1.10,c.55.1.10 109462,109463 3lm2A 226 1.312 3hi0A 508 1.368 2zf5O 497 1.534 1zc6A 305 1.747 c.55.1.5,c.55.1.5 124888,124889 3gg4A 554 1.857 2f9wA 271 1.887 c.55.1.13,c.55.1.13 133174,133175 3mcpA 366 2.373 2ch5A 347 2.629 c.55.1.5,c.55.1.5 130453,130454 3flcO 518 2.669 3l0qA 554 2.671 3gbtA 504 2.883 2uytA 489 3.806 3ezwA 526 3.833 2ivnA 330 4.283 1glcG 501 4.583 c.55.1.4,c.55.1.4 33519,33520 2q8nA 460 4.668 3h6eA 482 4.763 2w40A 503 5.246 3h46O 506 6.609 3d7eO 505 6.645 1z6rA 406 6.870 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3h3nO 506 7.154 1r59O 505 7.677 c.55.1.4,c.55.1.4 111697,111698 3ll3A 504 8.077 3ifrA 508 8.664 2itmA 484 8.875 1u6zA 513 8.945 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3epqA 302 8.978 1xwfA 431 10.18 c.2.1.4,c.23.12.3 122392,122393 1bu6O 501 14.13 c.55.1.4,c.55.1.4 33499,33500 2q2rA 373 14.49 1t6cA 315 18.26 c.55.1.8,c.55.1.8 106558,106559 2qdxA 257 18.48 1ig8A 486 20.57 c.55.1.3,c.55.1.3 64746,64747 3gybA 280 20.70 3c0bA 334 20.88 1a8pA 258 23.93 b.43.4.2,c.25.1.1 25654,31544 2h88C 140 24.34 3irsA 291 24.42 1huxA 270 25.55 c.55.1.5 61278 2d4wA 504 29.21 1v4sA 455 29.25 c.55.1.3,c.55.1.3 100309,100310 3bilA 348 30.08 1wuiS 267 30.94 e.19.1.1 121290 3f9mA 470 32.77 3brqA 296 33.55 1m1nB 522 33.95 c.92.2.3 78418 3lrxA 158 36.21 3gv0A 288 36.51 2qzsA 485 39.62 2eixA 243 40.45 2ajrA 331 40.96 c.72.1.1 126892 3lyuA 142 42.14 2q01A 497 42.65 2piaA 321 46.00 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1q1rA 431 46.10 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2p36A 335 48.05 3cs3A 277 48.18 1x42A 232 50.59 c.108.1.1 121677 1krhA 338 50.83 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1xhcA 367 51.52 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2fa8A 105 59.83 c.47.1.23 133185 3bp8C 75 60.16 d.95.1.1 155469 1czaN 917 60.93 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 3hz6A 511 61.66 2xdqA 460 62.90 1sc6A 404 63.70 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2zo9B 274 65.35 d.159.1.11 154714 2we8A 386 66.37 3mdqA 315 76.19 2cduA 452 78.52 2ijqA 161 79.40 a.246.2.1 137481 2tmdA 729 80.13 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1m1nA 491 81.32 c.92.2.3 78417 3ingA 325 81.44 2pia 321 82.05 1fdrA 248 82.23 b.43.4.2,c.25.1.1 25653,31543 3i8bA 515 84.55 2dxnA 274 87.34 d.159.1.11 146605 3ef6A 410 88.15 1yqzA 438 88.16