# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ap1A 327 0.01473 c.55.1.10,c.55.1.10 127108,127109 2aa4A 289 0.01486 c.55.1.10,c.55.1.10 126465,126466 2gtdA 251 0.01581 c.55.1.13,c.55.1.13 135634,135635 3htvA 310 0.08573 2e2oA 299 0.08653 2h3gX 268 0.1248 1sz2A 332 0.1387 c.55.1.7 112169 2gupA 292 0.1841 c.55.1.10,c.55.1.10 135744,135745 2qm1A 326 0.1964 2ewsA 287 0.2557 c.55.1.14 146991 1xc3A 302 0.3295 c.55.1.10,c.55.1.10 115102,115103 1woqA 267 0.4688 c.55.1.10,c.55.1.10 109462,109463 2hoeA 380 0.7264 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2r6hA 290 0.8415 3bexA 249 0.9169 c.55.1.13,c.55.1.13 155198,155199 1zbsA 291 0.9745 c.55.1.5,c.55.1.5 124870,124871 3gg4A 554 1.141 3lm2A 226 1.201 1zc6A 305 1.313 c.55.1.5,c.55.1.5 124888,124889 3l0qA 554 1.664 3flcO 518 1.859 3gbtA 504 1.911 3mcpA 366 2.009 3hi0A 508 2.342 3ezwA 526 2.461 2f9wA 271 2.743 c.55.1.13,c.55.1.13 133174,133175 3ll3A 504 2.887 1z6rA 406 3.174 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3epqA 302 3.827 3d7eO 505 3.876 3h46O 506 4.076 3h3nO 506 4.118 3ifrA 508 4.384 2uytA 489 4.477 1glcG 501 4.540 c.55.1.4,c.55.1.4 33519,33520 2w40A 503 5.014 2zf5O 497 5.328 2ivnA 330 5.584 2ch5A 347 5.669 c.55.1.5,c.55.1.5 130453,130454 1t6cA 315 6.805 c.55.1.8,c.55.1.8 106558,106559 1xwfA 431 6.982 c.2.1.4,c.23.12.3 122392,122393 1u6zA 513 7.107 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2itmA 484 7.225 3h6eA 482 7.723 2q8nA 460 8.818 1ig8A 486 11.23 c.55.1.3,c.55.1.3 64746,64747 2qdxA 257 11.33 2q2rA 373 11.41 3gybA 280 11.69 1bu6O 501 12.67 c.55.1.4,c.55.1.4 33499,33500 3bilA 348 14.18 1a8pA 258 20.46 b.43.4.2,c.25.1.1 25654,31544 2d4wA 504 22.54 3irsA 291 26.38 1czaN 917 27.16 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2o56A 407 28.05 3f9mA 470 28.99 2h88C 140 29.80 1q1rA 431 31.45 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3brqA 296 31.47 2yhx 457 32.36 2q01A 497 32.70 1huxA 270 34.28 c.55.1.5 61278 3gv0A 288 39.61 1v4sA 455 40.59 c.55.1.3,c.55.1.3 100309,100310 3c0bA 334 41.09 3jvpA 572 43.27 3k4hA 292 48.71 1m1nA 491 48.95 c.92.2.3 78417 3mdqA 315 49.28 2ajrA 331 54.21 c.72.1.1 126892 1r59O 505 56.44 c.55.1.4,c.55.1.4 111697,111698 3cs3A 277 60.59 3lrxA 158 61.87 2yhxA 457 62.23 i.12.1.1 46024 1m1nB 522 63.86 c.92.2.3 78418 2ijqA 161 64.77 a.246.2.1 137481 2e9xD 223 65.43 a.278.1.4,d.344.1.3 146744,146745 3hz6A 511 67.17 2zo9B 274 68.30 d.159.1.11 154714 1x42A 232 69.45 c.108.1.1 121677 2qzsA 485 71.40 3c3kA 285 71.48 1xhcA 367 72.10 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2fa8A 105 72.25 c.47.1.23 133185 3ef6A 410 74.13 1wuiS 267 75.01 e.19.1.1 121290 2p36A 335 76.73 2o20A 332 79.76 2xdqA 460 81.76 2cduA 452 87.23 1yqzA 438 88.01 2bryA 497 88.23 2eixA 243 88.60