# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gtdA 251 0.01851 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 0.02190 c.55.1.10,c.55.1.10 127108,127109 2ewsA 287 0.09841 c.55.1.14 146991 3htvA 310 0.4019 2gupA 292 0.5477 c.55.1.10,c.55.1.10 135744,135745 2qm1A 326 0.5512 2aa4A 289 0.9867 c.55.1.10,c.55.1.10 126465,126466 2h3gX 268 1.002 2e2oA 299 1.310 2hoeA 380 1.369 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1sz2A 332 1.686 c.55.1.7 112169 1xc3A 302 1.707 c.55.1.10,c.55.1.10 115102,115103 1woqA 267 1.860 c.55.1.10,c.55.1.10 109462,109463 2f9wA 271 1.906 c.55.1.13,c.55.1.13 133174,133175 3mcpA 366 2.032 2r6hA 290 2.629 2ivnA 330 2.963 3hi0A 508 3.545 2zf5O 497 3.610 3gg4A 554 3.644 3lm2A 226 3.736 1zbsA 291 3.786 c.55.1.5,c.55.1.5 124870,124871 3bexA 249 3.823 c.55.1.13,c.55.1.13 155198,155199 1xwfA 431 4.588 c.2.1.4,c.23.12.3 122392,122393 3l0qA 554 4.795 1r59O 505 5.214 c.55.1.4,c.55.1.4 111697,111698 3flcO 518 5.694 1z6rA 406 5.847 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2w40A 503 6.697 1zc6A 305 7.110 c.55.1.5,c.55.1.5 124888,124889 3gbtA 504 7.310 2qdxA 257 8.086 2uytA 489 8.271 2d4wA 504 8.656 3ll3A 504 8.656 3epqA 302 8.676 3ezwA 526 9.371 2itmA 484 9.932 1wuiS 267 10.00 e.19.1.1 121290 2q01A 497 10.66 3d7eO 505 10.79 3h3nO 506 11.03 1u6zA 513 11.31 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3h46O 506 11.54 3ifrA 508 12.00 1glcG 501 13.51 c.55.1.4,c.55.1.4 33519,33520 1q1rA 431 17.31 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2ch5A 347 18.38 c.55.1.5,c.55.1.5 130453,130454 2qzsA 485 19.32 1m1nA 491 20.05 c.92.2.3 78417 3h6eA 482 21.97 1m1nB 522 23.69 c.92.2.3 78418 2v3aA 384 27.44 1a8pA 258 29.91 b.43.4.2,c.25.1.1 25654,31544 1czaN 917 30.35 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1xhcA 367 30.50 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3lyuA 142 30.65 2xdqA 460 31.07 1bu6O 501 32.30 c.55.1.4,c.55.1.4 33499,33500 3hz6A 511 36.19 3lrxA 158 37.68 2q2rA 373 37.73 3jvpA 572 38.73 1yqzA 438 40.65 2p6pA 384 43.70 2h88C 140 44.20 3ef6A 410 46.34 3k1aA 491 46.40 2eixA 243 47.46 2cduA 452 49.10 2q8nA 460 49.26 3aekA 437 50.41 1gdhA 320 51.45 c.2.1.4,c.23.12.1 30095,31355 3bilA 348 51.76 1ii7A 333 53.48 d.159.1.4 62415 3irsA 291 53.96 1hdmA 201 56.25 b.1.1.2,d.19.1.1 21583,38157 2hc9A 491 60.77 2idbA 505 61.41 b.45.1.3,d.333.1.1 137270,137271 1e3jA 352 66.26 b.35.1.2,c.2.1.1 24765,29781 1ig8A 486 66.61 c.55.1.3,c.55.1.3 64746,64747 1dxyA 333 69.32 c.2.1.4,c.23.12.1 30094,31354 1t6cA 315 69.50 c.55.1.8,c.55.1.8 106558,106559 3k96A 356 69.52 2gqwA 408 70.06 3gybA 280 72.89 3c0bA 334 72.90 2o56A 407 73.50 2g1uA 155 74.49 2o4cA 380 79.40 3fwzA 140 80.71 1okjA 251 84.78 c.55.1.9,c.55.1.9 103998,103999 2dxnA 274 85.77 d.159.1.11 146605 2nacA 393 86.85 c.2.1.4,c.23.12.1 30088,31348 1s8eA 333 87.30 d.159.1.4 105368 2pezA 179 87.75 3graA 202 87.88 3cetA 334 89.47