# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aa4A 289 0.1546 c.55.1.10,c.55.1.10 126465,126466 2gtdA 251 0.1869 c.55.1.13,c.55.1.13 135634,135635 2ap1A 327 0.3749 c.55.1.10,c.55.1.10 127108,127109 2r6hA 290 0.8489 2gupA 292 1.076 c.55.1.10,c.55.1.10 135744,135745 2ewsA 287 1.739 c.55.1.14 146991 2e2oA 299 2.178 2qm1A 326 2.880 1sz2A 332 3.238 c.55.1.7 112169 1xc3A 302 3.276 c.55.1.10,c.55.1.10 115102,115103 3gg4A 554 3.534 1woqA 267 3.579 c.55.1.10,c.55.1.10 109462,109463 2h3gX 268 4.136 3htvA 310 4.430 3lm2A 226 5.291 2zf5O 497 5.679 3bexA 249 5.683 c.55.1.13,c.55.1.13 155198,155199 3hi0A 508 6.733 3gbtA 504 6.808 3l0qA 554 7.479 3mcpA 366 7.493 3flcO 518 11.49 2q8nA 460 11.92 3ll3A 504 13.23 2f9wA 271 13.49 c.55.1.13,c.55.1.13 133174,133175 1zc6A 305 13.65 c.55.1.5,c.55.1.5 124888,124889 1zbsA 291 14.30 c.55.1.5,c.55.1.5 124870,124871 2d4wA 504 14.53 2qdxA 257 20.20 3brqA 296 21.01 3h3nO 506 21.55 2itmA 484 21.79 3h46O 506 22.03 3gybA 280 23.27 2ch5A 347 23.31 c.55.1.5,c.55.1.5 130453,130454 3bilA 348 24.66 3ezwA 526 26.49 1a8pA 258 26.86 b.43.4.2,c.25.1.1 25654,31544 2w40A 503 26.92 1z6rA 406 28.36 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2uytA 489 29.95 3d7eO 505 30.44 2q2rA 373 33.60 3ifrA 508 35.40 1glcG 501 35.50 c.55.1.4,c.55.1.4 33519,33520 3gv0A 288 35.83 2bmwA 304 36.04 b.43.4.2,c.25.1.1 128815,128816 1xhcA 367 36.10 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3hz6A 511 38.14 3h6eA 482 39.99 1r59O 505 40.48 c.55.1.4,c.55.1.4 111697,111698 1vdeA 454 41.63 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 2bgiA 272 45.29 1m1nB 522 45.40 c.92.2.3 78418 2hoeA 380 47.11 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2o56A 407 50.32 1xwfA 431 50.59 c.2.1.4,c.23.12.3 122392,122393 2zo9B 274 52.09 d.159.1.11 154714 3k4hA 292 52.56 1huxA 270 53.65 c.55.1.5 61278 1wuiS 267 53.98 e.19.1.1 121290 1u6zA 513 56.88 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 3irsA 291 60.97 3lyuA 142 62.55 2qzsA 485 64.50 3lrxA 158 65.52 3epqA 302 67.63 1q1rA 431 68.35 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3f9mA 470 68.52 2q01A 497 69.24 3c0bA 334 72.85 1ig8A 486 74.92 c.55.1.3,c.55.1.3 64746,64747 1czaN 917 79.88 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2ivnA 330 86.51 1bu6O 501 89.12 c.55.1.4,c.55.1.4 33499,33500