# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gtdA 251 0.2694 c.55.1.13,c.55.1.13 135634,135635 2aa4A 289 0.3761 c.55.1.10,c.55.1.10 126465,126466 2r6hA 290 0.6081 2ap1A 327 0.6091 c.55.1.10,c.55.1.10 127108,127109 2gupA 292 2.106 c.55.1.10,c.55.1.10 135744,135745 2e2oA 299 2.112 2h3gX 268 3.755 1sz2A 332 3.876 c.55.1.7 112169 2ewsA 287 4.342 c.55.1.14 146991 3htvA 310 4.359 2qm1A 326 5.351 3gg4A 554 7.326 3bexA 249 7.414 c.55.1.13,c.55.1.13 155198,155199 3lm2A 226 8.075 2q8nA 460 8.828 1xc3A 302 8.946 c.55.1.10,c.55.1.10 115102,115103 2zf5O 497 9.225 3hi0A 508 9.358 1woqA 267 10.88 c.55.1.10,c.55.1.10 109462,109463 3gbtA 504 10.92 1zbsA 291 13.15 c.55.1.5,c.55.1.5 124870,124871 1zc6A 305 13.89 c.55.1.5,c.55.1.5 124888,124889 3l0qA 554 14.23 2f9wA 271 16.07 c.55.1.13,c.55.1.13 133174,133175 2bmwA 304 16.21 b.43.4.2,c.25.1.1 128815,128816 3flcO 518 17.00 3brqA 296 17.84 3bilA 348 18.63 3gybA 280 18.65 3mcpA 366 18.99 2ch5A 347 19.67 c.55.1.5,c.55.1.5 130453,130454 2d4wA 504 20.29 3ll3A 504 24.79 2uytA 489 26.12 2qdxA 257 29.16 3gv0A 288 30.54 1xhcA 367 30.80 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3ezwA 526 32.11 1m1nB 522 32.34 c.92.2.3 78418 3k4hA 292 33.42 1glcG 501 34.88 c.55.1.4,c.55.1.4 33519,33520 3h46O 506 36.98 3h3nO 506 37.23 1a8pA 258 37.73 b.43.4.2,c.25.1.1 25654,31544 3d7eO 505 38.90 2itmA 484 39.43 2o56A 407 39.89 2w40A 503 40.69 1wuiS 267 45.66 e.19.1.1 121290 1r59O 505 47.39 c.55.1.4,c.55.1.4 111697,111698 2q2rA 373 48.20 1z6rA 406 48.94 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1xwfA 431 52.07 c.2.1.4,c.23.12.3 122392,122393 1u6zA 513 56.32 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2qzsA 485 59.02 3irsA 291 60.51 1q1rA 431 61.60 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3ifrA 508 64.42 3h6eA 482 64.91 2q01A 497 68.23 2bgiA 272 69.53 1huxA 270 71.26 c.55.1.5 61278 1vdeA 454 72.16 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 2w9xA 366 75.31 3lrxA 158 76.08 2zo9B 274 76.36 d.159.1.11 154714 3hz6A 511 76.73 1fdrA 248 77.50 b.43.4.2,c.25.1.1 25653,31543 2hoeA 380 84.04 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1czaN 917 85.62 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1krhA 338 89.66 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893